nsv590337
- Organism: Homo sapiens
- Study:nstd54 (Cooper et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:15
- Validation:Not tested
- Clinical Assertions: No
- Region Size:5,492
- Publication(s):Cooper et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 401 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 400 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 180 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv590337 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nsv590337 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nsv590337 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv963287 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963288 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963289 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963290 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963291 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963292 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963293 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963294 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963295 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963296 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963297 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963298 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963299 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963300 | copy number loss | SNP array | SNP genotyping analysis |
| nssv963301 | copy number loss | SNP array | SNP genotyping analysis |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv963287 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963288 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963289 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963290 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963291 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963292 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963293 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963294 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963295 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963296 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963297 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963298 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963299 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963300 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963301 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5300477 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,004,770 |
| nssv963287 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963288 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963289 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963290 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963291 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963292 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963293 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963294 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963295 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963296 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963297 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963298 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963299 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963300 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963301 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5303878 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,038,786 |
| nssv963287 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963288 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963289 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963290 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963291 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963292 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963293 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963294 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963295 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963296 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963297 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963298 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963299 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963300 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 | ||
| nssv963301 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5301382 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,013,826 |