nsv590339
- Organism: Homo sapiens
- Study:nstd54 (Cooper et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:12,922
- Publication(s):Cooper et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 415 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 414 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 182 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv590339 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,012,200 |
| nsv590339 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,046,216 |
| nsv590339 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 53,008,335 | 53,021,256 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv963316 | copy number loss | SNP array | SNP genotyping analysis |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv963316 | Remapped | Perfect | NC_000003.12:g.(?_ 52999279)_(5301220 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,999,279 | 53,012,200 |
| nssv963316 | Remapped | Perfect | NC_000003.11:g.(?_ 53033295)_(5304621 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 53,033,295 | 53,046,216 |
| nssv963316 | Submitted genomic | NC_000003.10:g.(?_ 53008335)_(5302125 6_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 53,008,335 | 53,021,256 |