nsv5907910
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:3,251
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1866 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 1447 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 947 SVs from 40 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5907910 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000010.11 | Chr10 | 47,657,059 | 47,660,309 | ||
| nsv5907910 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000010.10 | Chr10 | 47,347,079 | 47,350,329 |
| nsv5907910 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 1,928,174 | 1,931,424 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17368182 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17368182 | Submitted genomic | NC_000010.11:g.476 57059_47660309del | GRCh38 (hg38) | NC_000010.11 | Chr10 | 47,657,059 | 47,660,309 | ||
| nssv17368182 | Remapped | Perfect | NW_003871068.1:g.1 928174_1931424del | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 1,928,174 | 1,931,424 |
| nssv17368182 | Remapped | Perfect | NC_000010.10:g.473 47079_47350329del | GRCh37.p13 | Second Pass | NC_000010.10 | Chr10 | 47,347,079 | 47,350,329 |