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dbVar

Database of genomic structural variation

nsv5926338

Organism: Homo sapiens

Study:nstd209 (Almarri et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:183

Publication(s):Almarri et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 106 SVs from 20 studies. See in: genome view

Submitted genomic112,967,650-112,967,832

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5926338	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000011.10	Chr11	112,967,650	112,967,832
nsv5926338	Remapped	Perfect	GRCh37.p13	Primary Assembly	Second Pass	NC_000011.9	Chr11	112,838,372	112,838,554
nsv5926338	Remapped	Perfect	GRCh37.p13	PATCHES	First Pass	NW_003871078.1	Chr11\|NW_0 03871078.1	150,376	150,558

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17362489	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17362489	Submitted genomic		NC_000011.10:g.112 967650_112967832de l	GRCh38 (hg38)		NC_000011.10	Chr11	112,967,650	112,967,832
nssv17362489	Remapped	Perfect	NW_003871078.1:g.1 50376_150558del	GRCh37.p13	First Pass	NW_003871078.1	Chr11\|NW_0 03871078.1	150,376	150,558
nssv17362489	Remapped	Perfect	NC_000011.9:g.1128 38372_112838554del	GRCh37.p13	Second Pass	NC_000011.9	Chr11	112,838,372	112,838,554

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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