nsv5979109
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:14,266
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 515 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 512 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 59 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5979109 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 154,525,030 | 154,539,295 | ||
| nsv5979109 | Remapped | Good | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 153,753,248 | 153,767,509 |
| nsv5979109 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871103.3 | ChrX|NW_00 3871103.3 | 1,959,009 | 1,973,274 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17515693 | copy number variation | Sequencing | Sequence alignment | 2 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17515693 | Submitted genomic | GRCh38 (hg38) | NC_000023.11 | ChrX | 154,525,030 | 154,539,295 | ||
| nssv17515693 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871103.3 | ChrX|NW_00 3871103.3 | 1,959,009 | 1,973,274 |
| nssv17515693 | Remapped | Good | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 153,753,248 | 153,767,509 |