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dbVar

Database of genomic structural variation

nsv6773008

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,072

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 196 SVs from 48 studies. See in: genome view

Submitted genomic78,813,976-78,816,047

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6773008	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000005.10	Chr5	78,813,976	78,816,047
nsv6773008	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	78,109,799	78,111,870

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18517763	deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18517763	Submitted genomic		NC_000005.10:g.788 13976_78816047del	GRCh38 (hg38)		NC_000005.10	Chr5	78,813,976	78,816,047
nssv18517763	Remapped	Perfect	NC_000005.9:g.7810 9799_78111870del	GRCh37.p13	First Pass	NC_000005.9	Chr5	78,109,799	78,111,870

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18517763	0.05	13779	274840

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