dbGaP

This subject phenotype table includes subject ID, age at diagnosis, number of APC mutation in APC zones 1-4, APC biallelic loss, patients grouped by 4 gene mutations or classed by different types of APC and other gene mutations, CMS (consensus molecular subtypes) group used the SSP (single sample predictor) method, primary tumor location in colon, primary tumor located site in colon, MSI (microsatellite instability) high status, tumor metastatic, colon cancer standard diagnostic stage, patients vital status and overall survival time, EMT signature scores, RAS downstream signature scores, expression mean of 64 beta-catenin targeted genes, and APC mRNA expression.

This subject phenotype table includes subject ID, age at diagnosis, number of APC mutation in APC zones 1-4, APC biallelic loss, patients grouped by 4 gene mutations or classed by different types of APC and other gene mutations, CMS (consensus molecular subtypes) group used the SSP (single sample predictor) method, primary tumor location in colon, primary tumor located site in colon, MSI (microsatellite instability) high status, tumor metastatic, colon cancer standard diagnostic stage, patients vital status and overall survival time, EMT signature scores, RAS downstream signature scores, expression mean of 64 beta-catenin targeted genes, and APC mRNA expression.

The subject sample mapping data table contains a mapping of study subject IDs to sample IDs. dbGaP samples are defined as the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.

This sample attributes table includes sample ID, body site where sample was collected, analyte type, histological type and tumor status of the sample.

This subject phenotype table includes subject ID, age at diagnosis, number of APC mutation in APC zones 1-4, APC biallelic loss, patients grouped by 4 gene mutations or classed by different types of APC and other gene mutations, CMS (consensus molecular subtypes) group used the SSP (single sample predictor) method, primary tumor location in colon, primary tumor located site in colon, MSI (microsatellite instability) high status, tumor metastatic, colon cancer standard diagnostic stage, patients vital status and overall survival time, EMT signature scores, RAS downstream signature scores, expression mean of 64 beta-catenin targeted genes, and APC mRNA expression.

The subject sample mapping data table contains a mapping of study subject IDs to sample IDs. dbGaP samples are defined as the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.

This subject phenotype table includes subject ID, age at diagnosis, number of APC mutation in APC zones 1-4, APC biallelic loss, patients grouped by 4 gene mutations or classed by different types of APC and other gene mutations, CMS (consensus molecular subtypes) group used the SSP (single sample predictor) method, primary tumor location in colon, primary tumor located site in colon, MSI (microsatellite instability) high status, tumor metastatic, colon cancer standard diagnostic stage, patients vital status and overall survival time, EMT signature scores, RAS downstream signature scores, expression mean of 64 beta-catenin targeted genes, and APC mRNA expression.

This subject phenotype table includes subject ID, age at diagnosis, number of APC mutation in APC zones 1-4, APC biallelic loss, patients grouped by 4 gene mutations or classed by different types of APC and other gene mutations, CMS (consensus molecular subtypes) group used the SSP (single sample predictor) method, primary tumor location in colon, primary tumor located site in colon, MSI (microsatellite instability) high status, tumor metastatic, colon cancer standard diagnostic stage, patients vital status and overall survival time, EMT signature scores, RAS downstream signature scores, expression mean of 64 beta-catenin targeted genes, and APC mRNA expression.

The subject sample mapping data table contains a mapping of study subject IDs to sample IDs. dbGaP samples are defined as the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.

This subject phenotype table includes subject ID, age at diagnosis, number of APC mutation in APC zones 1-4, APC biallelic loss, patients grouped by 4 gene mutations or classed by different types of APC and other gene mutations, CMS (consensus molecular subtypes) group used the SSP (single sample predictor) method, primary tumor location in colon, primary tumor located site in colon, MSI (microsatellite instability) high status, tumor metastatic, colon cancer standard diagnostic stage, patients vital status and overall survival time, EMT signature scores, RAS downstream signature scores, expression mean of 64 beta-catenin targeted genes, and APC mRNA expression.