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Items: 1 to 20 of 32

1.

Quantitative profiling of BATF family proteins/JUNB/IRF hetero-trimers using Spec-seq

(Submitter supplied) Spec-seq directly mesaures specificity by sequencing. We run an EMSA experiment on TF of interest with a library of DNA targets. Then we extract and sequence the bound and unbound portion of the DNA separately. Finally we count the occurences of each varient in the library and calculate the ratio and the relative binding energy.
Organism:
synthetic construct
Type:
Other
Platform:
GPL17769
30 Samples
Download data: TXT
Series
Accession:
GSE102219
ID:
200102219

SRA Run Selector

2.

Illumina MiSeq (synthetic construct)

Organism:
synthetic construct
96 Series
1201 Samples
Download data
Platform
Accession:
GPL17769
ID:
100017769

3.

BATF3-JUNB-IRF8-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730532
ID:
302730532

SRA Run Selector

4.

BATF3-JUNB-IRF4-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730531
ID:
302730531

SRA Run Selector

5.

BATF3-JUNB-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730530
ID:
302730530

SRA Run Selector

6.

BATF2-JUNB-IRF8-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730529
ID:
302730529

SRA Run Selector

7.

BATF2-JUNB-IRF4-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730528
ID:
302730528

SRA Run Selector

8.

BATF2-JUNB-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730527
ID:
302730527

SRA Run Selector

9.

BATF-JUNB-IRF8-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730526
ID:
302730526

SRA Run Selector

10.

BATF-JUNB-IRF4-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730525
ID:
302730525

SRA Run Selector

11.

BATF-JUNB-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730524
ID:
302730524

SRA Run Selector

12.

BATF3-IRF8-Specseq-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730523
ID:
302730523

SRA Run Selector

13.

BATF3-IRF4-Specseq-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730522
ID:
302730522

SRA Run Selector

14.

BATF2-IRF8-Specseq-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730521
ID:
302730521

SRA Run Selector

15.

BATF2-IRF4-Specseq-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730520
ID:
302730520

SRA Run Selector

16.

BATF-IRF8-Specseq-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730519
ID:
302730519

SRA Run Selector

17.

BATF-IRF4-Specseq-unbound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730518
ID:
302730518

SRA Run Selector

18.

BATF3-JUNB-IRF8-bound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730517
ID:
302730517

SRA Run Selector

19.

BATF3-JUNB-IRF4-bound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730516
ID:
302730516

SRA Run Selector

20.

BATF3-JUNB-bound

Organism:
synthetic construct
Source name:
Synthesized DNA
Platform:
GPL17769
Series:
GSE102219
Download data
Sample
Accession:
GSM2730515
ID:
302730515

SRA Run Selector

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