GSE123048[Accession] - GEO DataSets - NCBI

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Items: 16

Select item 2001230481.

Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation [RNA-seq]

(Submitter supplied) By shaping gene expression profiles, small RNAs (sRNAs) enable bacteria to efficiently adapt to changes in their environment. To better understand how Escherichia coli acclimatizes to nutrient availability, we performed UV cross-linking, ligation and sequencing of hybrids (CLASH) to uncover Hfq-associated RNA-RNA interactions at specific growth stages. We demonstrate that Hfq CLASH robustly captures bona fide RNA-RNA interactions identified hundreds of novel sRNA base-pairing interactions, including many sRNA-sRNA interactions and involving 3’UTR-derived sRNAs. more...

Organism:: Escherichia coli str. K-12 substr. MG1655

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26592
14 Samples

Download data: XLSX

Series

Accession:: GSE123048

ID:: 200123048

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000265922.

Illumina NovaSeq 6000 (Escherichia coli str. K-12 substr. MG1655)

Organism:: Escherichia coli str. K-12 substr. MG1655

24 Series
1350 Samples

Platform

Accession:: GPL26592

ID:: 100026592

Select item 3037389693.

Second Replicate RNA-seq sample OD600=4.0

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738969

ID:: 303738969

SRA Run Selector

Select item 3037389684.

Second Replicate RNA-seq sample OD600=3.0

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738968

ID:: 303738968

SRA Run Selector

Select item 3037389675.

Second Replicate RNA-seq sample OD600=2.4

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738967

ID:: 303738967

SRA Run Selector

Select item 3037389666.

Second Replicate RNA-seq sample OD600=1.8

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738966

ID:: 303738966

SRA Run Selector

Select item 3037389657.

Second Replicate RNA-seq sample OD600=1.2

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738965

ID:: 303738965

SRA Run Selector

Select item 3037389648.

Second Replicate RNA-seq sample OD600=0.8

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738964

ID:: 303738964

SRA Run Selector

Select item 3037389639.

Second Replicate RNA-seq sample OD600=0.4

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738963

ID:: 303738963

SRA Run Selector

Select item 30373896210.

First Replicate RNA-seq sample OD600=4.0

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738962

ID:: 303738962

SRA Run Selector

Select item 30373896111.

First Replicate RNA-seq sample OD600=3.0

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738961

ID:: 303738961

SRA Run Selector

Select item 30373896012.

First Replicate RNA-seq sample OD600=2.4

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738960

ID:: 303738960

SRA Run Selector

Select item 30373895913.

First Replicate RNA-seq sample OD600=1.8

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738959

ID:: 303738959

SRA Run Selector

Select item 30373895814.

First Replicate RNA-seq sample OD600=1.2

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738958

ID:: 303738958

SRA Run Selector

Select item 30373895715.

First Replicate RNA-seq sample OD600=0.8

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738957

ID:: 303738957

SRA Run Selector

Select item 30373895616.

First Replicate RNA-seq sample OD600=0.4

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: Escherichia coli grown in LB

Platform:: GPL26592
Series:: GSE123048 GSE123050

Sample

Accession:: GSM3738956

ID:: 303738956

SRA Run Selector

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