GSE153497[Accession] - GEO DataSets - NCBI

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Select item 2001534971.

RNA degradation analysis reveals ribosome dynamics in complex microbiome samples

(Submitter supplied) The microbiome has revealed itself as a key player in health and disease. To better understand its role, in addition to microbial diversity, it is important to understand species-specific activity and gene expression. While metatranscriptomics investigates mRNA abundance2, it does not inform about faster post-transcriptional regulation3. Although prokaryotic translation is a common target for antibiotics, a direct measurement of microbiome ribosome dynamics remains inaccessible. more...

Organism:: Segatella copri; Alistipes finegoldii; Hoylesella timonensis; compost metagenome; Listeria monocytogenes; Saccharomyces cerevisiae; Salmonella enterica; Parabacteroides merdae; Enterococcus faecalis; Bacillus subtilis; Limosilactobacillus reuteri; Limosilactobacillus fermentum; human feces metagenome; Escherichia coli; Synechocystis sp. PCC 6803; Staphylococcus aureus; Bacillus amyloliquefaciens; Lactiplantibacillus plantarum; Cryptococcus neoformans; Caulobacter vibrioides

Type:: Other

17 related Platforms
199 Samples

Download data: BEDGRAPH, TXT, XLSX

Series

Accession:: GSE153497

ID:: 200153497

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000331022.

Illumina NextSeq 500 (Bacillus subtilis; Cryptococcus neoformans; Enterococcus faecalis; Escherichia coli; Limosilactobacillus fermentum; Listeria monocytogenes; Saccharomyces cerevisiae; Salmonella enterica; Staphylococcus aureus)

Organism:: Escherichia coli; Staphylococcus aureus; Enterococcus faecalis; Bacillus subtilis; Limosilactobacillus fermentum; Listeria monocytogenes; Saccharomyces cerevisiae; Cryptococcus neoformans; Salmonella enterica

1 Series
1 Sample

Platform

Accession:: GPL33102

ID:: 100033102

Select item 1000331013.

Illumina NextSeq 500 (Lactiplantibacillus plantarum; Limosilactobacillus reuteri)

Organism:: Lactiplantibacillus plantarum; Limosilactobacillus reuteri

1 Series
11 Samples

Platform

Accession:: GPL33101

ID:: 100033101

Select item 1000331004.

Illumina NextSeq 500 (Limosilactobacillus reuteri)

Organism:: Limosilactobacillus reuteri

1 Series
10 Samples

Platform

Accession:: GPL33100

ID:: 100033100

Select item 1000324295.

NextSeq 2000 (Prevotella timonensis)

Organism:: Hoylesella timonensis

1 Series
6 Samples

Platform

Accession:: GPL32429

ID:: 100032429

Select item 1000324286.

NextSeq 2000 (Parabacteroides merdae)

Organism:: Parabacteroides merdae

1 Series
6 Samples

Platform

Accession:: GPL32428

ID:: 100032428

Select item 1000324277.

NextSeq 2000 (Prevotella copri)

Organism:: Segatella copri

1 Series
6 Samples

Platform

Accession:: GPL32427

ID:: 100032427

Select item 1000324268.

NextSeq 2000 (Bacillus subtilis)

Organism:: Bacillus subtilis

3 Series
59 Samples

Platform

Accession:: GPL32426

ID:: 100032426

Select item 1000324259.

NextSeq 2000 (Alistipes finegoldii)

Organism:: Alistipes finegoldii

1 Series
6 Samples

Platform

Accession:: GPL32425

ID:: 100032425

Select item 10003242410.

NextSeq 2000 (human feces metagenome)

Organism:: human feces metagenome

1 Series
18 Samples

Platform

Accession:: GPL32424

ID:: 100032424

Select item 10003208111.

NextSeq 2000 (Escherichia coli)

Organism:: Escherichia coli

13 Series
539 Samples

Platform

Accession:: GPL32081

ID:: 100032081

Select item 10002932812.

Illumina NextSeq 500 (Lactiplantibacillus plantarum)

Organism:: Lactiplantibacillus plantarum

2 Series
41 Samples

Platform

Accession:: GPL29328

ID:: 100029328

Select item 10002879113.

Illumina NextSeq 500 (compost metagenome)

Organism:: compost metagenome

1 Series
2 Samples

Platform

Accession:: GPL28791

ID:: 100028791

Select item 10002878514.

Illumina NextSeq 500 (Bacillus amyloliquefaciens)

Organism:: Bacillus amyloliquefaciens

1 Series
8 Samples

Platform

Accession:: GPL28785

ID:: 100028785

Select item 10002455515.

Illumina NextSeq 500 (Caulobacter vibrioides)

Organism:: Caulobacter vibrioides

15 Series
87 Samples

Platform

Accession:: GPL24555

ID:: 100024555

Select item 10002410916.

Illumina NextSeq 500 (Bacillus subtilis)

Organism:: Bacillus subtilis

25 Series
453 Samples

Platform

Accession:: GPL24109

ID:: 100024109

Select item 10002292317.

Illumina NextSeq 500 (Synechocystis sp. PCC 6803)

Organism:: Synechocystis sp. PCC 6803

6 Series
31 Samples

Platform

Accession:: GPL22923

ID:: 100022923

Select item 10002122218.

Illumina NextSeq 500 (Escherichia coli)

Organism:: Escherichia coli

123 Series
2265 Samples

Platform

Accession:: GPL21222

ID:: 100021222

Select item 30464529919.

lpla_stat_r6_s_r_v1

Organism:: Lactiplantibacillus plantarum

Source name:: Liquid culture of Lactobacillus plantarum (ATCC 8014.

Platform:: GPL29328
Series:: GSE153497

Download data: BEDGRAPH

Sample

Accession:: GSM4645299

ID:: 304645299

SRA Run Selector

Select item 30464529820.

lpla_stat_r5_s_r_v1

Organism:: Lactiplantibacillus plantarum

Source name:: Liquid culture of Lactobacillus plantarum (ATCC 8014.

Platform:: GPL29328
Series:: GSE153497

Download data: BEDGRAPH

Sample

Accession:: GSM4645298

ID:: 304645298

SRA Run Selector

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