GSE256357[Accession] - GEO DataSets - NCBI

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Select item 2002563571.

ParBF DNA binding profiles over various supercoiling level and on linear DNA

(Submitter supplied) We report the genome-wide analysis from chromatin immunoprecipitated DNA (ChIP-sequencing) of the DNA binding pattern of ParBF (SopB) of plasmid F. This study, performed in E. coli and Salmonella typhimurium, investigates the impact of DNA supercoiling on ParBF DNA binding profiles in vivo. We found that variation in DNA supercoiling does not significantly affect the ParB DNA binding profiles even on linear DNA.

Organism:: Escherichia coli; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL25140 GPL34219
18 Samples

Download data: TXT

Series

Accession:: GSE256357

ID:: 200256357

Select item 1000342192.

Ion Torrent S5 (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

1 Series
5 Samples

Platform

Accession:: GPL34219

ID:: 100034219

Select item 1000251403.

Ion Torrent S5 (Escherichia coli)

Organism:: Escherichia coli

3 Series
56 Samples

Platform

Accession:: GPL25140

ID:: 100025140

Select item 3080959984.

ParBF, S.typhi LT2, F, IP1

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

Source name:: plasmid

Platform:: GPL34219
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8095998

ID:: 308095998

SRA Run Selector

Select item 3080959975.

ParBF, S.typhi LT2, F, input

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

Source name:: plasmid

Platform:: GPL34219
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8095997

ID:: 308095997

SRA Run Selector

Select item 3080959966.

ParBF, S.typhi LT2 gyrB, F, IP2

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

Source name:: plasmid

Platform:: GPL34219
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8095996

ID:: 308095996

SRA Run Selector

Select item 3080959957.

ParBF, S.typhi LT2 gyrB, F, IP1

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

Source name:: plasmid

Platform:: GPL34219
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8095995

ID:: 308095995

SRA Run Selector

Select item 3080959948.

ParBF, S.typhi LT2 gyrB, F, input

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

Source name:: plasmid

Platform:: GPL34219
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8095994

ID:: 308095994

SRA Run Selector

Select item 3080960089.

ParBF, E.coli WT, F_telRL3.5, IP2

Organism:: Escherichia coli

Source name:: plasmid

Platform:: GPL25140
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8096008

ID:: 308096008

SRA Run Selector

Select item 30809600710.

ParBF, E.coli WT, F_telRL3.5, IP1

Organism:: Escherichia coli

Source name:: plasmid

Platform:: GPL25140
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8096007

ID:: 308096007

SRA Run Selector

Select item 30809600611.

ParBF, E.coli WT, F_telRL3.5, input

Organism:: Escherichia coli

Source name:: plasmid

Platform:: GPL25140
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8096006

ID:: 308096006

SRA Run Selector

Select item 30809600512.

ParBF, E.coli WT, F_telRL13, IP2

Organism:: Escherichia coli

Source name:: plasmid

Platform:: GPL25140
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8096005

ID:: 308096005

SRA Run Selector

Select item 30809600413.

ParBF, E.coli WT, F_telRL13, IP1

Organism:: Escherichia coli

Source name:: plasmid

Platform:: GPL25140
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8096004

ID:: 308096004

SRA Run Selector

Select item 30809600314.

ParBF, E.coli WT, F_telRL13, input

Organism:: Escherichia coli

Source name:: plasmid

Platform:: GPL25140
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8096003

ID:: 308096003

SRA Run Selector

Select item 30809600215.

ParBF, E.coli WT, F_telRL47, IP1

Organism:: Escherichia coli

Source name:: plasmid

Platform:: GPL25140
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8096002

ID:: 308096002

SRA Run Selector

Select item 30809600116.

ParBF, E.coli WT, F_telRL47, input

Organism:: Escherichia coli

Source name:: plasmid

Platform:: GPL25140
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8096001

ID:: 308096001

SRA Run Selector

Select item 30809600017.

ParBF, E.coli WT, F, IP1

Organism:: Escherichia coli

Source name:: plasmid

Platform:: GPL25140
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8096000

ID:: 308096000

SRA Run Selector

Select item 30809599918.

ParBF, E.coli WT, F, input

Organism:: Escherichia coli

Source name:: plasmid

Platform:: GPL25140
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8095999

ID:: 308095999

SRA Run Selector

Select item 30809599319.

ParBF, E.coli topA, F, IP2

Organism:: Escherichia coli

Source name:: plasmid

Platform:: GPL25140
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8095993

ID:: 308095993

SRA Run Selector

Select item 30809599220.

ParBF, E.coli topA, F, IP1

Organism:: Escherichia coli

Source name:: plasmid

Platform:: GPL25140
Series:: GSE256357

Download data: TXT

Sample

Accession:: GSM8095992

ID:: 308095992

SRA Run Selector

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