GSE69242[Accession] - GEO DataSets - NCBI

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Items: 18

Select item 2000692421.

Next Generation Sequencing Facilitates Small RNA Mediated Rice Resistance to Xoo

(Submitter supplied) Purpose: The goal of this study is to identify small non-conding RNAs which are involved in rice resistance to Xoo. Methods: Rice leaves were inoculated with the Xoo strain PXO61 at the four-leaf to five-leaf stage by the leaf-clipping method. Control rice plants were inoculated with water (mock inoculation). And then, total RNA was extracted to be sequenced using Illumina GAIIx. Results: Using an optimized data analysis workflow to count the expression level of small ncRNA, we found several differentially expressed small ncRNA which may be participated in the interaction between rice and Xoo. more...

Organism:: Oryza sativa Japonica Group

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL13808
16 Samples

Download data: TXT

Series

Accession:: GSE69242

ID:: 200069242

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000138082.

Illumina Genome Analyzer II (Oryza sativa Japonica Group)

Organism:: Oryza sativa Japonica Group

5 Series
53 Samples

Platform

Accession:: GPL13808

ID:: 100013808

Select item 3016959473.

Rb49 leaves with 4 hours post mock treatment, technical replicate 2

Organism:: Oryza sativa Japonica Group

Source name:: Rb49 leaves with 4 hours post mock treatment, technical replicate 2

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695947

ID:: 301695947

SRA Run Selector

Select item 3016959464.

Rb49 leaves with 24 hours post PXO61 treatment

Organism:: Oryza sativa Japonica Group

Source name:: Rb49 leaves with 24 hours post PXO61 treatment

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695946

ID:: 301695946

SRA Run Selector

Select item 3016959455.

Rb49 leaves with 4 hours post PXO61 treatment

Organism:: Oryza sativa Japonica Group

Source name:: Rb49 leaves with 4 hours post PXO61 treatment

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695945

ID:: 301695945

SRA Run Selector

Select item 3016959446.

Rb49 leaves with 2 hours post PXO61 treatment

Organism:: Oryza sativa Japonica Group

Source name:: Rb49 leaves with 2 hours post PXO61 treatment

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695944

ID:: 301695944

SRA Run Selector

Select item 3016959437.

Rb49 leaves with 24 hours post mock treatment

Organism:: Oryza sativa Japonica Group

Source name:: Rb49 leaves with 24 hours post mock treatment

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695943

ID:: 301695943

SRA Run Selector

Select item 3016959428.

Rb49 leaves with 4 hours post mock treatment, technical replicate 1

Organism:: Oryza sativa Japonica Group

Source name:: Rb49 leaves with 4 hours post mock treatment, technical replicate 1

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695942

ID:: 301695942

SRA Run Selector

Select item 3016959419.

Rb49 leaves with 2 hours post mock treatment

Organism:: Oryza sativa Japonica Group

Source name:: Rb49 leaves with 2 hours post mock treatment

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695941

ID:: 301695941

SRA Run Selector

Select item 30169594010.

Rb49 leaves before treatment

Organism:: Oryza sativa Japonica Group

Source name:: Rb49 leaves before treatment as control

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695940

ID:: 301695940

SRA Run Selector

Select item 30169593911.

MDJ8 leaves before treatment, biological replicate 2

Organism:: Oryza sativa Japonica Group

Source name:: MDJ8 leaves before treatment as control, biological replicate 2

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695939

ID:: 301695939

SRA Run Selector

Select item 30169593812.

MDJ8 leaves with 24 hours post PXO61 treatment

Organism:: Oryza sativa Japonica Group

Source name:: MDJ8 leaves with 24 hours post PXO61 treatment

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695938

ID:: 301695938

SRA Run Selector

Select item 30169593713.

MDJ8 leaves with 4 hours post PXO61 treatment

Organism:: Oryza sativa Japonica Group

Source name:: MDJ8 leaves with 4 hours post PXO61 treatment

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695937

ID:: 301695937

SRA Run Selector

Select item 30169593614.

MDJ8 leaves with 2 hours post PXO61 treatment

Organism:: Oryza sativa Japonica Group

Source name:: MDJ8 leaves with 2 hours post PXO61 treatment

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695936

ID:: 301695936

SRA Run Selector

Select item 30169593515.

MDJ8 leaves with 24 hours post mock treatment

Organism:: Oryza sativa Japonica Group

Source name:: MDJ8 leaves with 24 hours post mock treatment

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695935

ID:: 301695935

SRA Run Selector

Select item 30169593416.

MDJ8 leaves with 4 hours post mock treatment

Organism:: Oryza sativa Japonica Group

Source name:: MDJ8 leaves with 4 hours post mock treatment

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695934

ID:: 301695934

SRA Run Selector

Select item 30169593317.

MDJ8 leaves with 2 hours post mock treatment

Organism:: Oryza sativa Japonica Group

Source name:: MDJ8 leaves with 2 hours post mock treatment

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695933

ID:: 301695933

SRA Run Selector

Select item 30169593218.

MDJ8 leaves before treatment, biological replicate 1

Organism:: Oryza sativa Japonica Group

Source name:: MDJ8 leaves before treatment as control, biological replicate 1

Platform:: GPL13808
Series:: GSE69242

Download data: TXT

Sample

Accession:: GSM1695932

ID:: 301695932

SRA Run Selector

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