GSE94984[Accession] - GEO DataSets - NCBI

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Items: 6

Select item 2000949841.

Differentiation of ncRNAs from small mRNAs in Escherichia coli O157:H7 EDL933 (EHEC) by combined RNAseq and RIBOseq – ryhB encodes the regulatory RNA RyhB and a peptide, RyhP

(Submitter supplied) While NGS allows rapid global detection of transcripts, it remains difficult to distinguish ncRNAs from short mRNAs. To detect potentially translated RNAs, we developed an improved protocol for bacterial ribosomal footprinting (RIBOseq). This allowed distinguishing ncRNA from mRNA in EHEC. A high ratio of ribosomal footprints per transcript (ribosomal coverage value, RCV) is expected to indicate a translated RNA, while a low RCV should point to a non-translated RNA. more...

Organism:: Escherichia coli O157:H7 str. EDL933

Type:: Expression profiling by high throughput sequencing; Other

Platform:: GPL23073
4 Samples

Download data: XLSX

Series

Accession:: GSE94984

ID:: 200094984

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000230732.

Illumina MiSeq (Escherichia coli O157:H7 str. EDL933)

Organism:: Escherichia coli O157:H7 str. EDL933

2 Series
10 Samples

Platform

Accession:: GPL23073

ID:: 100023073

Select item 3024937983.

EHEC in LB Experiment 2 [RIBO-Seq]

Organism:: Escherichia coli O157:H7 str. EDL933

Source name:: biomass collected in the transition between exponential to stationary phase

Platform:: GPL23073
Series:: GSE94984

Sample

Accession:: GSM2493798

ID:: 302493798

SRA Run Selector

Select item 3024937974.

EHEC in LB Experiment 2 [RNA-Seq]

Organism:: Escherichia coli O157:H7 str. EDL933

Source name:: biomass collected in the transition between exponential to stationary phase

Platform:: GPL23073
Series:: GSE94984

Sample

Accession:: GSM2493797

ID:: 302493797

SRA Run Selector

Select item 3024937965.

EHEC in LB Experiment 1 [RIBO-Seq]

Organism:: Escherichia coli O157:H7 str. EDL933

Source name:: biomass collected in the transition between exponential to stationary phase

Platform:: GPL23073
Series:: GSE94984

Sample

Accession:: GSM2493796

ID:: 302493796

SRA Run Selector

Select item 3024937956.

EHEC in LB Experiment 1 [RNA-Seq]

Organism:: Escherichia coli O157:H7 str. EDL933

Source name:: biomass collected in the transition between exponential to stationary phase

Platform:: GPL23073
Series:: GSE94984

Sample

Accession:: GSM2493795

ID:: 302493795

SRA Run Selector

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GSE94984[Accession] (6)
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