GSM7030333[Accession] - GEO DataSets

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Items: 3

Select item 2001534971.

RNA degradation analysis reveals ribosome dynamics in complex microbiome samples

(Submitter supplied) The microbiome has revealed itself as a key player in health and disease. To better understand its role, in addition to microbial diversity, it is important to understand species-specific activity and gene expression. While metatranscriptomics investigates mRNA abundance2, it does not inform about faster post-transcriptional regulation3. Although prokaryotic translation is a common target for antibiotics, a direct measurement of microbiome ribosome dynamics remains inaccessible. more...

Organism:: Escherichia coli; Synechocystis sp. PCC 6803; Staphylococcus aureus; Bacillus amyloliquefaciens; Lactiplantibacillus plantarum; Cryptococcus neoformans; Caulobacter vibrioides; Listeria monocytogenes; Saccharomyces cerevisiae; Salmonella enterica; Parabacteroides merdae; Enterococcus faecalis; Bacillus subtilis; Limosilactobacillus reuteri; Limosilactobacillus fermentum; human feces metagenome; Segatella copri; Alistipes finegoldii; Hoylesella timonensis; compost metagenome

Type:: Other

17 related Platforms
199 Samples

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Series

Accession:: GSE153497

ID:: 200153497

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000324262.

NextSeq 2000 (Bacillus subtilis)

Organism:: Bacillus subtilis

3 Series
59 Samples

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Platform

Accession:: GPL32426

ID:: 100032426

Select item 3070303333.

bsub-rnja_ctr_r3_s_o_v17

Organism:: Bacillus subtilis

Source name:: Liquid culture of ribonuclease J1 deletion strain (rnjA) Bacillus subtilis 168 trpC2, supplemented with 100µg/ml Spectinomycin for selection