GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Cymbidium ringspot virus; Nicotiana benthamiana

Type:

Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL15026 GPL10313

6 Samples

Download data: FNA, QUAL

(Submitter supplied) We profiled vsiRNAs using two different high-throughput sequencing platforms and also developed a hybridisation-based array approach. The profiles obtained through the Solexa platform and by hybridisation were very similar to each other but different from the 454 profile. Both deep sequencing techniques revealed a strong bias in vsiRNAs for the positive strand of the virus and identified regions on the viral genome that produced vsiRNA in much higher abundance than other regions. more...

Organism:

Cymbidium ringspot virus; Nicotiana benthamiana

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL15026

2 Samples

Download data: FNA, QUAL, TXT

(Submitter supplied) We profiled vsiRNAs using two different high-throughput sequencing platforms and also developed a hybridisation-based array approach. The profiles obtained through the Solexa platform and by hybridisation were very similar to each other but different from the 454 profile. Both deep sequencing techniques revealed a strong bias in vsiRNAs for the positive strand of the virus and identified regions on the viral genome that produced vsiRNA in much higher abundance than other regions. more...

Organism:

Cymbidium ringspot virus; Nicotiana benthamiana

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL10313

4 Samples

Download data: TXT

(Submitter supplied) Plant virus infection involves the production of viral small RNAs (vsRNAs) with the potential to associate with distinct Argonaute (AGO)-containing silencing complexes and mediate diverse silencing effects on RNA and chromatin. We used multiplexed, high-throughput pyrosequencing to profile populations of vsRNAs from plants infected with viruses from different genera. Sense and antisense vsRNAs of 20 to 24 nucleotides (nts) spread throughout the entire viral genomes in an overlapping configuration; virtually all genomic nucleotide positions were represented in the dataset. more...

Organism:

Melon necrotic spot virus; Potato virus X; Turnip mosaic virus; Cucumber mosaic virus; Tomato yellow leaf curl virus; Cymbidium ringspot virus; Pepper mild mottle virus; Tobacco rattle virus; Watermelon mosaic virus

Type:

Non-coding RNA profiling by high throughput sequencing

9 related Platforms

10 Samples

Download data: TXT