txid2961[Organism:noexp] - GEO DataSets

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Select item 2002486111.

Characterization of the enzyme for 5-hydroxymethyluridine production and its role in silencing transposable elements in dinoflagellates

(Submitter supplied) Dinoflagellate chromosomes are extraordinary, as their organization is independent of architectural nucleosomes unlike typical eukaryotes and shows a cholesteric liquid crystal state. 5-hydroxymethyluridine (5hmU) is present at unusually high levels and its function remains an enigma in dinoflagellates chromosomal DNA for several decades. Here, we demonstrate that 5hmU contents vary among different dinoflagellates and are generated through thymidine hydroxylation. more...

Organism:: Amphidinium carterae

Type:: Expression profiling by high throughput sequencing; Other

4 related Platforms
27 Samples

Download data: CGMAP, FA, GFF, TXT, WIG

Series

Accession:: GSE248611

ID:: 200248611

Select item 2002712402.

Abundant mRNA m1A modification in dinoflagellates: a new layer of gene regulation [m1A-seq-TGIRT]

(Submitter supplied) Dinoflagellates, a class of unicellular eukaryotic phytoplankton, exhibit minimal transcriptional regulation, representing a unique model for exploring gene expression. The biosynthesis, distribution, regulation, and function of mRNA N1-methyladenosine (m1A) remain controversial due to its limited presence in typical eukaryotic mRNA. This study found that m1A, rather than N6-methyladenosine (m6A), is the most prevalent internal mRNA modification in various dinoflagellate species, with an asymmetrically distribution along mature transcripts. more...

Organism:: Amphidinium carterae

Type:: Other

Platform:: GPL33888
4 Samples

Download data: BED

Series

Accession:: GSE271240

ID:: 200271240

PubMed Similar studies

Select item 2002469533.

Abundant mRNA m1A modification in dinoflagellates: a new layer of gene regulation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Amphidinium carterae

Type:: Expression profiling by high throughput sequencing; Other

4 related Platforms
27 Samples

Download data: TXT

Series

Accession:: GSE246953

ID:: 200246953

PubMed Similar studies

Select item 2002469214.

Abundant mRNA m1A modification in dinoflagellates: a new layer of gene regulation [Nanopore]

Organism:: Amphidinium carterae

Type:: Expression profiling by high throughput sequencing; Other

Platform:: GPL33909
1 Sample

Download data: TXT

Series

Accession:: GSE246921

ID:: 200246921

PubMed Similar studies

Select item 2002465535.

Abundant mRNA m1A modification in dinoflagellates: a new layer of gene regulation [MeRIP-seq, RNA-seq, Ribo-seq]

Organism:: Amphidinium carterae

Type:: Expression profiling by high throughput sequencing; Other

Platforms:: GPL33889 GPL33887 GPL33888
22 Samples

Download data: CSV, TXT

Series

Accession:: GSE246553

ID:: 200246553

PubMed Similar studies

Select item 2000943556.

De novo transcriptome of the cosmopolitan dinoflagellate Amphidinium carterae to identify genes with biotechnological interests

(Submitter supplied) Dinoflagellates are phytoplanktonic organisms found in both freshwater and marine habitats. They are often studied because related to harmful algal blooms responsible for impacts on ecosystem functioning, economic damages for aquaculture and fishery industries and/or deleterious impacts for human health. In addition they are also known to produce bioactive compounds, such as for the treatment of cancer or beneficial effects for the treatment of Alzheimer’s disease. more...