GEO DataSets

(Submitter supplied) Prochlorococcus is found throughout the euphotic zone in the oligotrophic open ocean. Deep mixing and sinking in aggregates or while attached to particles can, however, transport cells below this sunlit zone, depriving them of light for extended periods of time and influencing their circulation via ocean currents. Viability of these cells over extended periods of darkness could shape the ecology and evolution of the Prochlorococcus collective. more...

Organism:

Alteromonas macleodii; Prochlorococcus marinus str. NATL2A

Type:

Expression profiling by high throughput sequencing

Platform:

GPL34397

42 Samples

Download data: TSV

(Submitter supplied) Examining the impact of short term exposure to HDPE and PVC plastic leachates on gene transcription in Prochlorococcus cultures in vitro

Organism:

Prochlorococcus marinus str. NATL2A; Prochlorococcus marinus str. MIT 9312

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL25433 GPL25434

18 Samples

Download data: CSV

(Submitter supplied) We examine how the transcriptome of Prochlorococcus strain NATL2A changes in response to extended light deprivation, both when grown alone and in the presence of a naturally co-occurring heterotroph, Alteromonas macleodii MIT1002.

Organism:

Alteromonas macleodii; Prochlorococcus marinus str. NATL2A

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL20970 GPL20972

113 Samples

Download data: TXT

(Submitter supplied) We examine how the transcriptome of Prochlorococcus strain NATL2A changes in the presence of a naturally co-occurring heterotroph, Alteromonas macleodii MIT1002. Significant changes in the Prochlorococcus transcriptome were evident within six hours of co-culture, with groups of transcripts changing in different temporal waves. Many transcriptional changes persisted throughout the 48-hour experiment, indicating that the presence of the heterotroph affected a stable shift in Prochlorococcus physiology. more...

Organism:

Alteromonas macleodii; Prochlorococcus marinus str. NATL2A

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL20972 GPL20970

42 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Prochlorococcus marinus str. NATL2A; Synechococcus phage syn9; Cyanophage P-TIM40; Synechococcus sp. WH 7803; Parasynechococcus marenigrum WH 8102; Synechococcus sp. WH 8109

Type:

Expression profiling by array; Expression profiling by high throughput sequencing

4 related Platforms

187 Samples

Download data: CEL

(Submitter supplied) Cyanobacteria are highly abundant in the oceans and are constantly exposed to lytic viruses. The T4-like cyanomyoviruses are abundant in the marine environment and have broad host ranges relative to other cyanophages. It is currently unknown whether broad-host-range phages specifically tailor their infection program for each host, or employ the same program irrespective of the host infected. Also unknown is how different hosts respond to infection by the same phage. more...

Organism:

Prochlorococcus marinus str. NATL2A; Cyanophage P-TIM40; Parasynechococcus marenigrum WH 8102; Synechococcus sp. WH 8109; Synechococcus sp. WH 7803; Synechococcus phage syn9

Type:

Expression profiling by array

Platform:

GPL19456

133 Samples

Download data: CEL, TXT