GEO DataSets

(Submitter supplied) 5-methylcytosine (5mC) is a widespread silencing mechanism that controls genomic parasites. However, in many eukaryotes 5mC has gained complex roles in gene regulation beyond parasite control. Animals are a paradigmatic case for 5mC evolution, as they show widespread variability across lineages, ranging from gene regulation and transposable element control to loss of this base modification. Here we show that the protist animal relative Amoebidium appalachense displays both transposon and gene body methylation, a pattern reminiscent of invertebrates and plants. more...

Organism:

Creolimax fragrantissima; Amoebidium parasiticum; Amoebidium appalachense; Ichthyosporea sp. XGB-2017a; Sphaeroforma arctica

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

5 related Platforms

50 Samples

Download data: CGMAP, TSV, TXT

(Submitter supplied) PRO-seq experiments in multiple organisms. Also, PRO-seq experiment of Nelfb and Nelfe degron mESC in serum/LIF with or without dTAG-13. 

Organism:

Haloferax mediterranei; Dryas iulia; Nematostella vectensis; Daphnia pulex; Strongylocentrotus purpuratus; Sphaeroforma arctica; Dictyostelium discoideum; Capsaspora owczarzaki; Creolimax fragrantissima; Escherichia coli; Mus musculus; Perkinsus marinus

Type:

Other

12 related Platforms

46 Samples

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