GEO DataSets

(Submitter supplied) Whole-genome sequencing is an important way to understand the genetic information, gene function, biological characteristics, and living mechanisms of organisms. There is no difficulty to have mega-level genomes sequenced at present. However, we encountered a hard-to-sequence genome of Pseudomonas aeruginosa phage PaP1. The shotgun sequencing method failed to dissect this genome. After insisting for 10 years and going over 3 generations of sequencing techniques, we successfully dissected the PaP1 genome with 91,715 bp in length. more...

Organism:

Pseudomonas phage PaP1

Type:

Methylation profiling by high throughput sequencing

Platform:

GPL17610

1 Sample

Download data: CSV, GFF

(Submitter supplied) Pseudomonas aeruginosa bacteriophage PhiKZ is the type representative of the ‘giant’ phage genus with unusually large virions and genomes. By unraveling the transcriptional map of the 280 kb genome to single-nucleotide resolution, we show that it encodes 369 genes organized in 134 operons, 20% more than originally annotated. Early transcription is initiated from 28 highly conserved AT-rich promoters distributed over the PhiKZ genome, all located on the same strand. more...

Organism:

Pseudomonas aeruginosa; Phikzvirus phiKZ

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL18804 GPL18644

12 Samples

Download data: TXT