GEO DataSets

(Submitter supplied) Chitin is a major component of fungal cell walls and serves as a molecular pattern for the recognition of potential pathogens in the innate immune systems of both plants and animals. In plants, chitin oligosaccharides have been known to induce various defense responses in a wide range of plant cells including both monocots and dicots. We identified chitine oligosaccharide-responsive genes in suspension-cultured rice cells 6 and 24 h after treatment using rice 44k microarray.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

8 Samples

Download data: TXT

(Submitter supplied) To see the effect of overexpression of the bZIP transcription factor OsTGAP1, we compared the gene expression profiles in wild type rice cells and OsTGAP1-overexpressing rice cells.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

12 Samples

Download data: TXT

(Submitter supplied) OsMKK4 is a rice MAPKK and immediately activated by treatment with chitin elicitor, a fungal MAMP. OsMKK4 phosphrylate and activate OsMPK6. We compared gene expression in osmpk6 and osmpk6 complemented cells expressing active OsMKK4 using rice 44K oligoarray.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

12 Samples

Download data: TXT

(Submitter supplied) OsMKK4 is a rice MAPKK and immediately activated by treatment with chitin elicitor, a fungal MAMP. OsMKK4DD is a constitutively active mutants of OsMKK4. We identified OsMKK4 regulated genes using a conditional gain-of-function transgenic system and rice 44K oligoarray.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

26 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Oryza sativa

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL19290

16 Samples

Download data: TXT

(Submitter supplied) MicroRNAs (miRNAs) are small non-coding RNAs that act as post-transcriptional regulators of gene expression via sequence-specific cleavage or translational repression of target transcripts. They are transcribed as long single-stranded RNA precursors with unique stem-loop structures that are processed by a DICER-Like (DCL) ribonuclease, typically DCL1, to produce mature miRNA sequences. Here, we investigated the contribution of OsDCL1 to innate immunity in rice. more...

Organism:

Oryza sativa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19290

8 Samples

Download data: TXT

(Submitter supplied) MicroRNAs (miRNAs) are small non-coding RNAs that act as post-transcriptional regulators of gene expression via sequence-specific cleavage or translational repression of target transcripts. They are transcribed as long single-stranded RNA precursors with unique stem-loop structures that are processed by a DICER-Like (DCL) ribonuclease, typically DCL1, to produce mature miRNA sequences. Here, we investigated the contribution of OsDCL1 to innate immunity in rice. more...

Organism:

Oryza sativa

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL19290

8 Samples

Download data: TXT

(Submitter supplied) WRKY62 is a transcriptional repressor regulated downstream of WRKY45, a central TF of the salicylic acid (SA) signaling pathway for defense response in rice. To characteraze SA signaling induced genes whose expressions were regulated by WRKY62, we analized genome-wide epression profiles in WRKY62-kd and NB rice using benzothiadiazole (BTH), SA singaling activator.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL8852

8 Samples

Download data: TXT

(Submitter supplied) Analysis of leaves of wild-type and jasmonate (JA)-deficeint mutant cpm2 treated with CuCl2. Results provide the role of JA on defence responses after copper chloride treatment.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL8852

42 Samples

Download data: TXT

(Submitter supplied) Jasmonates is inductively produced as a major plant hormone responsible for defense reactions in plants against both biotic and abiotic stresses, such as pathogen infection and mechanical wounding. Jasmonoyl isoleucine is known to be a bioactive compound of jasmonate and plays a pivotal role for plant defenses. We identified OsJAR1−related JA-inducible genes in osjar1 tos17 mutant (osjar1-2) rice leaves 0 - 2 h after JA treatment using 44k microarray.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

12 Samples

Download data: TXT

(Submitter supplied) Jasmonates is inductively produced as a major plant hormone responsible for defense reactions in plants against both biotic and abiotic stresses, such as pathogen infection and mechanical wounding. We identified JA-inducible genes in the wild-type rice leaves 0 - 4 h after JA treatment using 44k microarray.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

12 Samples

Download data: TXT

(Submitter supplied) We used mRNA sequencing to study the effects of foliar piperonylic acid treatment on the transcriptome of rice plants (cv. Nipponbare) and infection by M. graminicola to gain insights in the molecular basis of piperonylic acid-induced disease resistance against this nematode

Organism:

Oryza sativa Japonica Group

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26083

12 Samples

Download data: CSV

(Submitter supplied) We used mRNA sequencing to study the effects of foliar piperonylic acid treatment on the transcriptome of rice plants (cv. Nipponbare) and infection by M. graminicola to gain insights in the molecular basis of piperonylic acid-induced disease resistance against this nematode

Organism:

Oryza sativa Japonica Group

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26083

30 Samples

Download data: CSV

(Submitter supplied) Accumulating information indicates that plant disease resistance signaling pathway frequently interact with other pathways regulating developmental processes or abiotic stress responses. However, the molecular mechanisms of these types of crosstalk remain poorly understood in most cases. Here we report that OsWRKY13, an activator of rice resistance to both bacterial and fungal pathogens, functions as a convergent point of the crosstalk between pathogen-induced salicylate-dependent defense pathway and at least five other physiological pathways. more...

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL2025

9 Samples

Download data: CEL, CHP, EXP

(Submitter supplied) MicroRNAs (miRNAs) are small non-coding RNAs that function as post-transcriptional regulators of gene expression in eukaryotes. In rice, miR7695 targets an alternatively spliced transcript of natural resistance-associated macrophage protein 6 (OsNramp6) encoding an iron transporter whose expression is regulated by infection with the rice blast fungus Magnaporthe oryzae. Rice plants grown under high iron supply showed blast resistance, which supports that iron is a factor in controlling blast resistance by still unknown mechanisms. more...

Organism:

Oryza sativa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19290

8 Samples

Download data: XLSX

(Submitter supplied) RNA-seq was conducted on overexpressed GmMYB29A2 hairy roots of Williams 82 (W82)

Organism:

Glycine max

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24802

9 Samples

Download data

(Submitter supplied) RNA-seq was conducted on hairy roots of Williams 82 (W82) and imbibing seeds of Harosoy 63 (H63) upon treatment with the P. sojae wall glucan elicitor (WGE) at the times of maximum glyceollin biosynthesis.

Organism:

Glycine max

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24802

16 Samples

Download data: TXT