GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Escherichia coli

Type:

Genome binding/occupancy profiling by high throughput sequencing; Other

Platform:

GPL14548

27 Samples

Download data: BEDGRAPH

(Submitter supplied) In the bacterium Escherichia coli, RecG directs DNA synthesis during the repair of DNA double-strand breaks by homologous recombination.

Organism:

Escherichia coli

Type:

Other

Platform:

GPL14548

23 Samples

Download data: TXT

(Submitter supplied) In the bacterium Escherichia coli, RecG directs DNA synthesis during the repair of DNA double-strand breaks by homologous recombination.

Organism:

Escherichia coli

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL14548

4 Samples

Download data: BEDGRAPH

(Submitter supplied) Counting DNA reads using whole genome sequencing is providing new insight into DNA double-strand break repair (DSBR) in the model organism Escherichia coli. We describe the application of RecA chromatin immunoprecipitation coupled to genomic DNA sequencing (RecA-ChIP-seq) and marker frequency analysis (MFA) to analyse the genomic consequences of DSBR.

Organism:

Escherichia coli

Type:

Genome binding/occupancy profiling by high throughput sequencing; Other

Platforms:

GPL25368 GPL18133

24 Samples

Download data: CSV, FASTA

(Submitter supplied) Counting DNA reads using whole genome sequencing is providing new insight into DNA double-strand break repair (DSBR) in the model organism Escherichia coli. We describe the application of RecA chromatin immunoprecipitation coupled to genomic DNA sequencing (RecA-ChIP-seq) and marker frequency analysis (MFA) to analyse the genomic consequences of DSBR.

Organism:

Escherichia coli

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL25368

8 Samples

Download data: CSV, FASTA

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Escherichia coli K-12

Type:

Genome binding/occupancy profiling by high throughput sequencing; Other

Platforms:

GPL19529 GPL24377

18 Samples

Download data: CSV, TXT

(Submitter supplied) The effect of an induced site-specific DNA double-strand break on DNA abundance across the chromosome of E. coli cells expressing or not RecD protein, was investigated by marker frequency analysis.

Organism:

Escherichia coli K-12

Type:

Other

Platform:

GPL19529

10 Samples

Download data: CSV, FASTA

(Submitter supplied) In the bacterium Escherichia coli, RecBCD coordinates repair of two ends at a DNA double-strand break, preventing aberrant chromosome amplification

Organism:

Escherichia coli K-12

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL24377 GPL19529

8 Samples

Download data: CSV, FASTA, TXT

(Submitter supplied) Chromosome duplication normally initiates via the assembly of replication fork complexes at defined origins. DNA synthesis by any one fork is thought to cease when it meets another travelling in the opposite direction, at which stage the replication machinery may simply dissociate before the nascent strands are finally ligated. But what actually happens is not clear. Here we present evidence consistent with the idea that every fork collision has the potential to trigger re-replication of the already replicated DNA, thus posing a threat to genomic integrity. more...

Organism:

Escherichia coli

Type:

Other

Platform:

GPL16232

33 Samples

Download data: TXT, WIG