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Links from GEO DataSets

Items: 7

1.

Integrated copy number and transcriptomic profiling reveal novel oncogenic drivers and clinically significant biomarkers in adenoid cystic carcinoma

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Expression profiling by array; Genome variation profiling by genome tiling array
Platforms:
GPL10123 GPL4091 GPL6244
137 Samples
Download data: CEL, CHP, TXT
Series
Accession:
GSE153230
ID:
200153230
2.

Integrated copy number and transcriptomic profiling reveal novel oncogenic drivers and clinically significant biomarkers in adenoid cystic carcinoma [Agilent]

(Submitter supplied) We analyzed 100 patient samples by high-resolution arrayCGH to study genomic imbalances in ACC.
Organism:
Homo sapiens
Type:
Genome variation profiling by genome tiling array
Platforms:
GPL4091 GPL10123
100 Samples
Download data: TXT
Series
Accession:
GSE153228
ID:
200153228
3.

Integrated copy number and transcriptomic profiling reveal novel oncogenic drivers and clinically significant biomarkers in adenoid cystic carcinoma [Affymetrix]

(Submitter supplied) This experiment investigates global gene expression in adenoid cystic carcinoma (30) and normal salivary gland tissue (7).
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL6244
37 Samples
Download data: CEL, CHP
Series
Accession:
GSE153002
ID:
200153002
4.

Clinically significant copy number alterations and complex rearrangements of MYB and NFIB in adenoid cystic carcinoma of the head and neck

(Submitter supplied) Using high-resolution, array-based comparative genomic hybridization (aCGH), we explored genomic alterations in 40 fresh-frozen ACC samples, the largest cohort to date, with the aims to: (1) identify recurrent CNAs in ACC; (2) identify novel candidate target genes; and (3) correlate recurrent CNAs with tumour grade and other clinical parameters to identify potential clinically useful biomarkers.
Organism:
Homo sapiens
Type:
Genome variation profiling by genome tiling array
Platform:
GPL4091
40 Samples
Download data: TXT
Series
Accession:
GSE34816
ID:
200034816
5.

Expression data of 13 surgical samples of adenoid cystic carcinoma (ACC), 2 ACC xenografts, and 7 normal salivary gland tissues (NSGs)

(Submitter supplied) This experiment investigates differences in global gene expression between ACC and NSG.
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL6244
22 Samples
Download data: CEL, CHP
Series
Accession:
GSE88804
ID:
200088804
6.

Expression data after knockdown of MYB-NFIB and IGF1R/INSR inhibition in ACC cells

(Submitter supplied) The MYB-NFIB gene is a driver-mutation in the majority of adenoid cystic carcinomas (ACCs) and believed to control a large number of genes involved in tumorigenesis. This experiment investigates the effects on gene expression after siRNA knock-down of MYB-NFIB and/or inhibition of IGF1R/INSR signaling in ACC cells.
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL6244
18 Samples
Download data: CEL, CHP
Series
Accession:
GSE76094
ID:
200076094
7.

Cell-type-specific tumour sensitivity identified with a bromodomain targeting PROTAC in adenoid cystic carcinoma.

(Submitter supplied) Salivary gland adenoid cystic carcinoma (ACC) is a rare malignancy with limited treatment options. The development of novel therapies is hindered by a lack of preclinical models. We have generated several ACC patient-derived xenograft (PDX) lines that retain the physical and genetic properties of the original tumours, including the presence of the common MYB/MYBL1-NFIB translocation. Using these PDXs, we have developed the conditions for the generation of 2D and 3D ACC models that retain MYB expression and can be used for drug studies. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL30173
6 Samples
Download data: TSV
Series
Accession:
GSE237382
ID:
200237382
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