txid272634[Organism] - GEO DataSets

(Submitter supplied) Two main articles have used this data. The small bacterium Mycoplasma pneumoniae with its annotated 689 protein-coding genes and 44 RNAs constitutes an ideal system for global and conditional transcription analysis in bacteria. We have combined spotted arrays under more than 120 conditions with several strand-specific, high resolution tiling arrays to obtain an unprecedented level of detail of bacterial gene expression. more...

Organism:: Mycoplasmoides pneumoniae M129

Type:: Expression profiling by array

Platform:: GPL7822
252 Samples

Download data: GPR

Series

Accession:: GSE14015

ID:: 200014015

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000140143.

Mycoplasma pneumoniae transcriptome analysis

Organism:: Mycoplasmoides pneumoniae M129

Type:: Expression profiling by genome tiling array; Non-coding RNA profiling by genome tiling array

Platform:: GPL7821
43 Samples

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Series

Accession:: GSE14014

ID:: 200014014

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000078224.

EMBL Mycoplasma pneumoniae Operon Oligonucleotide Array

(Submitter supplied) A custom DNA array has been designed consisting of 688 70mers representing 688 annotated ORFs. The Mycoplasma pneumoniae array consists of oligos (70 bases, amino linker) spotted in the array four times each. The design and synthesis of the 688 oligos (probes) was performed by Operon and the spotting was done in EMBL Genomic Core Facility.

Organism:: Mycoplasmoides pneumoniae M129

2 Series
252 Samples

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Platform

Accession:: GPL7822

ID:: 100007822

Select item 1000078215.

Custom Affymetrix Mycoplasma pneumoniae tiling array MPM129b520449F

(Submitter supplied) see manufacturer's website

Organism:: Mycoplasmoides pneumoniae M129

2 Series
43 Samples

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Platform

Accession:: GPL7821

ID:: 100007821

Select item 3003520496.

GC_1-72h

Organism:: Mycoplasmoides pneumoniae M129

Source name:: M129 cells were collected after 3 days in culture

Platform:: GPL7822
Series:: GSE14015 GSE14019

Download data: GPR

Sample

Accession:: GSM352049

ID:: 300352049

Select item 3003520487.

GC_1-48h

Organism:: Mycoplasmoides pneumoniae M129

Source name:: M129 cells were collected after 2 days in culture

Platform:: GPL7822
Series:: GSE14015 GSE14019

Download data: GPR

Sample

Accession:: GSM352048

ID:: 300352048

Select item 3003520478.

GC_1-24h

Organism:: Mycoplasmoides pneumoniae M129

Source name:: M129 cells were collected after 1 day in culture

Platform:: GPL7822
Series:: GSE14015 GSE14019

Download data: GPR

Sample

Accession:: GSM352047

ID:: 300352047

Select item 3003520469.

TFII-TF15

Organism:: Mycoplasmoides pneumoniae M129

Source name:: pMT85-tuf->dnaA-flag line

Platform:: GPL7822
Series:: GSE14015 GSE14019

Download data: GPR

Sample

Accession:: GSM352046

ID:: 300352046

Select item 30035204510.

TFII-TF13

Organism:: Mycoplasmoides pneumoniae M129

Source name:: pMT85-tuf->relA-flag line

Platform:: GPL7822
Series:: GSE14015 GSE14019

Download data: GPR

Sample

Accession:: GSM352045

ID:: 300352045

Select item 30035204411.

TFII-TF6

Organism:: Mycoplasmoides pneumoniae M129

Source name:: pMT85-tuf->GntR-flag line

Platform:: GPL7822
Series:: GSE14015 GSE14019

Download data: GPR

Sample

Accession:: GSM352044

ID:: 300352044

Select item 30035204312.

TFII-TF5

Organism:: Mycoplasmoides pneumoniae M129

Source name:: pMT85-tuf->hrcA-flag line

Platform:: GPL7822
Series:: GSE14015 GSE14019

Download data: GPR

Sample

Accession:: GSM352043

ID:: 300352043

Select item 30035204213.

SR-2dHS

Organism:: Mycoplasmoides pneumoniae M129

Source name:: 20 min heat-shock at 42C after 2 days in cluture (control is SR-0'Shx)

Platform:: GPL7822
Series:: GSE14015 GSE14019

Download data: GPR

Sample

Accession:: GSM352042

ID:: 300352042

Select item 30035204114.

SR-60'NV

Organism:: Mycoplasmoides pneumoniae M129

Source name:: Cells grown for 2 days, 0.5mg/ml DL-norvaline added for the indicated time points (60 min) to generate unloaded tRNAs

Platform:: GPL7822
Series:: GSE14015 GSE14019

Download data: GPR

Sample

Accession:: GSM352041

ID:: 300352041

Select item 30035204015.

SR-30'NV

Organism:: Mycoplasmoides pneumoniae M129

Source name:: Cells grown for 2 days, 0.5mg/ml DL-norvaline added for the indicated time points (30 min) to generate unloaded tRNAs

Platform:: GPL7822
Series:: GSE14015 GSE14019

Download data: GPR

Sample

Accession:: GSM352040

ID:: 300352040

Select item 30035203916.

SR-15'NV

Organism:: Mycoplasmoides pneumoniae M129

Source name:: Cells grown for 2 days, 0.5mg/ml DL-norvaline added for the indicated time points (15 min) to generate unloaded tRNAs

Platform:: GPL7822
Series:: GSE14015 GSE14019

Download data: GPR

Sample

Accession:: GSM352039

ID:: 300352039

Select item 30035203817.

SR-5'NV

Organism:: Mycoplasmoides pneumoniae M129

Source name:: Cells grown for 2 days, 0.5mg/ml DL-norvaline added for the indicated time points (5 min) to generate unloaded tRNAs

Platform:: GPL7822
Series:: GSE14015 GSE14019

Download data: GPR

Sample

Accession:: GSM352038

ID:: 300352038

Select item 30035203718.

SR-SR

Organism:: Mycoplasmoides pneumoniae M129

Source name:: Amino acid starvation: stringent response in minimal medium, cells grown 2 days in rich medium, and changed for 15 min to minimal medium with (CtlSR) and without peptides and amino acids (SR)

Platform:: GPL7822
Series:: GSE14015 GSE14019

Download data: GPR

Sample

Accession:: GSM352037

ID:: 300352037

Select item 30035203619.

SR-ctlSR

Organism:: Mycoplasmoides pneumoniae M129

Source name:: Amino acid starvation: stringent response in minimal medium, cells grown 2 days in rich medium, and changed for 15 min to minimal medium with (CtlSR) and without peptides and amino acids (SR)