GEO DataSets

(Submitter supplied) Herpesviruses are frequently co-present with bacterial infection at multiple sites within the body, including the mouth, gut, and genitourinary tract. The detection of replicating virus in these compartments prompted investigation into the relationship between bacterial infection and Kaposi’s Sarcoma-associated Herpesvirus (KSHV) reactivation. Using a cell line latently infected with KSHV, we examined the ability of crude spent media containing metabolic products from periodontal and gut pathogens to reactivate KSHV. more...

Organism:

Homo sapiens; Simian-Human immunodeficiency virus; Human alphaherpesvirus 1; Human alphaherpesvirus 2; Human alphaherpesvirus 3; Human betaherpesvirus 7; human papillomavirus 72; Human betaherpesvirus 6; Cucumber mosaic virus; Human gammaherpesvirus 8

Type:

Expression profiling by array

Platform:

GPL19981

7 Samples

Download data: GPR, TXT

(Submitter supplied) 70mer probes were designed to detect plant viruses infection in genus level. This microarray platform is able to detect 169 plant virus species of 13 virus genera.

Organism:

Potexvirus; Potato virus X; Plum pox virus; Comovirus; Bean pod mottle virus; Nepovirus; Arabis mosaic virus; Tobravirus; Prunus necrotic ringspot virus; Taraxacum officinale; Pomovirus; Potyvirus; Tobamovirus; Tobacco mosaic virus; Ilarvirus; unidentified; Zinnia elegans; Orthotospovirus; Orthotospovirus tomatomaculae; Carlavirus; Capillovirus; Tobacco ringspot virus; Sobemovirus; Southern bean mosaic virus; Tomato ringspot virus; Cucumovirus

Type:

Expression profiling by array

Platform:

GPL8484

17 Samples

Download data: GPR

(Submitter supplied) We investigated the role of A. thaliana RDRs in the RNAi-mediated viral immunity by using a mutant of cucumber mosaic virus (CMV) that does not express the VSR protein 2b. CMV contains three positive-strand genomic RNAs and the 2b protein encoded by RNA2 is essential for infection by suppressing antiviral silencing initiated by either DCL4 or DCL2. Our results demonstrate an essential role for the amplification of viral siRNAs by either RDR1 or RDR6 in antiviral silencing. more...

Organism:

Arabidopsis thaliana; Cucumber mosaic virus (strain FNY)

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL9951

6 Samples

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(Submitter supplied) Plant virus infection involves the production of viral small RNAs (vsRNAs) with the potential to associate with distinct Argonaute (AGO)-containing silencing complexes and mediate diverse silencing effects on RNA and chromatin. We used multiplexed, high-throughput pyrosequencing to profile populations of vsRNAs from plants infected with viruses from different genera. Sense and antisense vsRNAs of 20 to 24 nucleotides (nts) spread throughout the entire viral genomes in an overlapping configuration; virtually all genomic nucleotide positions were represented in the dataset. more...

Organism:

Melon necrotic spot virus; Potato virus X; Turnip mosaic virus; Cucumber mosaic virus; Tobacco rattle virus; Watermelon mosaic virus; Tomato yellow leaf curl virus; Cymbidium ringspot virus; Pepper mild mottle virus

Type:

Non-coding RNA profiling by high throughput sequencing

9 related Platforms

10 Samples

Download data: TXT

(Submitter supplied) only viral oligo sequences are available (human oligo sequences unavailable) An 18k array (a later version of the same array with additional human genes) is GPL550. Protocol: unavailable

Organism:

Homo sapiens; Human alphaherpesvirus 1; Human alphaherpesvirus 2; Human alphaherpesvirus 3; Human betaherpesvirus 6; Human betaherpesvirus 7; Cucumber mosaic virus; Human gammaherpesvirus 8; Simian-Human immunodeficiency virus; human papillomavirus 72

1 Series

7 Samples

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(Submitter supplied) 70mer probes were designed to detect plant viruses infection in genus level. This microarray platform is able to detect 169 plant virus species of 13 virus genera. Protocol: The 70-mer oligonucleotide arrays were synthesized on 75-mmx25-mm glass slides using a SmartArrayer system (CapitalBio, China). All probes were spotted three times on the microarray. The reverse complementary sequences of the Capillovirus and Tospovirus probes were synthesized to analyze the probe strand effect. more...

Organism:

Sobemovirus; Carlavirus; Capillovirus; Potexvirus; Potyvirus; Tobamovirus; Comovirus; Nepovirus; Tobravirus; Cucumovirus; Ilarvirus; Pomovirus; Orthotospovirus

1 Series

17 Samples

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