GEO DataSets

(Submitter supplied) This study characterizes the transcriptomic alterations of Laccaria bicolor S238N during interaction with Pseudotsuga menziesii. Three time-points were analyzed, two weeks, four weeks and six weeks after inoculation and compared to the transcriptome of free-living mycelium from Laccaria bicolor S238N.

Organism:

Laccaria bicolor S238N-H82; Pseudotsuga menziesii; Laccaria bicolor

Type:

Expression profiling by array

Platform:

GPL14641

12 Samples

Download data: PAIR

(Submitter supplied) This study characterizes the transcriptomic alterations of Laccaria bicolor S238N during interaction with P. trichocarpa. Four time-points were analyzed, two weeks, four weeks , six weeks and twelve weeks after inoculation and compared to the transcriptome of free-living mycelium from Laccaria bicolor S238N

Organism:

Populus trichocarpa; Laccaria bicolor S238N-H82; Laccaria bicolor

Type:

Expression profiling by array

Platform:

GPL14641

19 Samples

Download data: PAIR

(Submitter supplied) Transcript profiles of Laccaria bicolor S238N mycelium on various media were analyzed. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, department of energy) Laccaria bicolor genome sequence version 1. One goal was to evaluate the effect of nutrient deprivation on the transcriptome of Laccaria bicolor.

Organism:

Laccaria bicolor S238N-H82; Laccaria bicolor

Type:

Expression profiling by array

Platform:

GPL14641

15 Samples

Download data: PAIR

(Submitter supplied) Laccaria bicolor transcript profiles of different tissues and mycorrhizal root tips from different host trees were analyzed. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, department of energy) Laccaria bicolor genome sequence version 1. One goal was to compare gene expression profiles from ectomycorrhizal root tips with different host plants.

Organism:

Populus trichocarpa; Laccaria bicolor S238N-H82; Pseudotsuga menziesii; Populus deltoides

Type:

Expression profiling by array

Platform:

GPL14641

12 Samples

Download data: PAIR

(Submitter supplied) Bacteria use small diffusible molecules to communicate and to coordinate population response by a cell density-depend mechanism named quorum sensing (QS). If such a cross-talk was first described between bacterial species, it was recently evidenced that bacterial QS signal molecules can also be sensed by eukaryotic organisms thus playing as inter-kingdom signalling molecules. Although ectomycorrhizal fungi interact physically and metabolically with myriads of bacterial species in soils, nothing is known about the ability of ectomycorrhiza-associated bacteria to produce QS molecules and the potential impact of these molecules in the interaction. more...

Organism:

Laccaria bicolor S238N-H82; Laccaria bicolor

Type:

Expression profiling by array

Platform:

GPL9465

8 Samples

Download data: TXT

(Submitter supplied) The Transcriptome of different tissues and developmental stages of Laccaria bicolor S238N was analyzed. The array probes were designed from gene models taken from the Joint Genome institute Laccaria bicolor genome sequence version1. One aim of this study was to verify the expression of the automatically annotated gene models in various tissues and to use this transcriptional information to confirm, to correct or to reject gene models. more...

Organism:

Laccaria bicolor S238N-H82; Pseudotsuga menziesii; Populus trichocarpa; Laccaria bicolor; Populus tremula x Populus alba

Type:

Expression profiling by array

Platform:

GPL6192

11 Samples

Download data: TXT

(Submitter supplied) This is a condensed platform of the full array which has probes designed from gene models taken from the Joint Genome Institute Laccaria bicolor genome sequence version 1.0 Protocol: Propriety in situ oligonucleotide synthesis

Organism:

Laccaria bicolor S238N-H82

4 Series

52 Samples

Download data: NDF

(Submitter supplied) This is a condensed platform of the full array which has probes designed from gene models taken from the Joint Genome Institute Laccaria bicolor genome sequence version 1.0 Protocol: Propriety in situ oligonucleotide synthesis

Organism:

Laccaria bicolor S238N-H82

1 Series

11 Samples

Download data: TXT