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Items: 13

1.

Genetic and functional analysis of archaeal ATP-dependent RNA ligase in ribosomal RNA biogenesis

(Submitter supplied) In this study, we generated allelic knockouts of ATP-dependent RNA ligase (Rnl) in hyperthermophilic archaeon T. kodakarensis and analyze the total and small RNA by RNA-Seq.
Organism:
Thermococcus kodakarensis KOD1
Type:
Expression profiling by high throughput sequencing
Platform:
GPL30910
4 Samples
Download data: TXT
Series
Accession:
GSE186817
ID:
200186817

SRA Run Selector

2.

Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis

(Submitter supplied) Background: Prokaryotes have relatively small genomes, densely-packed and apparently dominated by protein-encoding sequences. However, data now generated by high throughput RNA sequencing (RNA-seq) reveal surprisingly more-complex transcriptomes with many previously unrecognized and unanticipated non-coding small and antisense transcripts. To date, such studies have investigated primarily Bacteria. more...
Organism:
Thermococcus kodakarensis KOD1
Type:
Expression profiling by high throughput sequencing
Platform:
GPL18473
5 Samples
Download data: WIG
Series
Accession:
GSE56262
ID:
200056262

PubMed Full text in PMC Similar studies SRA Run Selector

3.

Illumina HiSeq 2500 (Thermococcus kodakarensis KOD1)

Organism:
Thermococcus kodakarensis KOD1
1 Series
4 Samples
Download data
Platform
Accession:
GPL30910
ID:
100030910

4.

Illumina HiSeq 2000 (Thermococcus kodakarensis KOD1)

Organism:
Thermococcus kodakarensis KOD1
1 Series
5 Samples
Download data
Platform
Accession:
GPL18473
ID:
100018473

5.

KOD1-KO-Small-RNA-sample

Organism:
Thermococcus kodakarensis KOD1
Source name:
Thermococcus kodakarensis KOD1
Platform:
GPL30910
Series:
GSE186817
Download data: TXT
Sample
Accession:
GSM5661564
ID:
305661564

SRA Run Selector

6.

KOD1-KO-Total-RNA-sample

Organism:
Thermococcus kodakarensis KOD1
Source name:
Thermococcus kodakarensis KOD1
Platform:
GPL30910
Series:
GSE186817
Download data: TXT
Sample
Accession:
GSM5661563
ID:
305661563

SRA Run Selector

7.

KOD1-WT-Small-RNA-sample

Organism:
Thermococcus kodakarensis KOD1
Source name:
Thermococcus kodakarensis KOD1
Platform:
GPL30910
Series:
GSE186817
Download data: TXT
Sample
Accession:
GSM5661562
ID:
305661562

SRA Run Selector

8.

KOD1-WT-Total-RNA-sample

Organism:
Thermococcus kodakarensis KOD1
Source name:
Thermococcus kodakarensis KOD1
Platform:
GPL30910
Series:
GSE186817
Download data: TXT
Sample
Accession:
GSM5661561
ID:
305661561

SRA Run Selector

9.

Tk_wt_S0_20min_plus_TEX

Organism:
Thermococcus kodakarensis KOD1
Source name:
cells
Platform:
GPL18473
Series:
GSE56262
Download data: WIG
Sample
Accession:
GSM1357917
ID:
301357917

SRA Run Selector

10.

Tk_wt_Pyr_plus_TEX

Organism:
Thermococcus kodakarensis KOD1
Source name:
cells
Platform:
GPL18473
Series:
GSE56262
Download data: WIG
Sample
Accession:
GSM1357916
ID:
301357916

SRA Run Selector

11.

Tk_wt_stat_plus_TEX

Organism:
Thermococcus kodakarensis KOD1
Source name:
cells
Platform:
GPL18473
Series:
GSE56262
Download data: WIG
Sample
Accession:
GSM1357915
ID:
301357915

SRA Run Selector

12.

TK_wt_exp_plus_TEX

Organism:
Thermococcus kodakarensis KOD1
Source name:
cells
Platform:
GPL18473
Series:
GSE56262
Download data: WIG
Sample
Accession:
GSM1357914
ID:
301357914

SRA Run Selector

13.

TK_wt_exp_minus_TEX

Organism:
Thermococcus kodakarensis KOD1
Source name:
cells
Platform:
GPL18473
Series:
GSE56262
Download data: WIG
Sample
Accession:
GSM1357913
ID:
301357913

SRA Run Selector

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