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si:ch211-147m20.1p si:ch211-147m20.1, pseudogene [ Danio rerio (zebrafish) ]

Gene ID: 100000250, updated on 16-Nov-2024

Summary

Official Symbol
si:ch211-147m20.1pprovided by ZNC
Official Full Name
si:ch211-147m20.1, pseudogeneprovided by ZNC
Primary source
ZFIN:ZDB-GENEP-081104-125
See related
Ensembl:ENSDARG00000091941 AllianceGenome:ZFIN:ZDB-GENEP-081104-125
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-147m20.1
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Genomic context

See si:ch211-147m20.1p in Genome Data Viewer
Location:
chromosome: 18
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (24477189..24483838)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (24490978..24497291)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488224 Neighboring gene si:ch211-147m20.3 Neighboring gene uncharacterized LOC110438094 Neighboring gene LysM, putative peptidoglycan-binding, domain containing 4

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_197951.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CR847971

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    24477189..24483838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_011007262.1 RNA Sequence

    Related
    ENSDART00000136548.2

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395027.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    139468..146117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_011010233.1 RNA Sequence