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znf207b zinc finger protein 207, b [ Danio rerio (zebrafish) ]

Gene ID: 100001293, updated on 14-Nov-2024

Summary

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Official Symbol
znf207bprovided by ZNC
Official Full Name
zinc finger protein 207, bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7377
See related
Ensembl:ENSDARG00000101277 AllianceGenome:ZFIN:ZDB-GENE-030131-7377
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
Zfp207; znf207; zgc:56601; wu:fb50g07; wu:fc17a09; wu:fc17a10; wu:fj12e11
Summary
Predicted to enable microtubule binding activity. Predicted to be involved in attachment of spindle microtubules to kinetochore; mitotic spindle assembly; and mitotic spindle assembly checkpoint signaling. Predicted to be active in kinetochore; nucleus; and spindle matrix. Orthologous to human ZNF207 (zinc finger protein 207). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See znf207b in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (18605644..18618106, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (22134323..22146825, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene ras homolog family member T1 Neighboring gene cd7 antigen-like Neighboring gene rhomboid, veinlet-like 3 (Drosophila) Neighboring gene trinucleotide repeat containing adaptor 6C2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC56601, MGC77794

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
BUB3-interacting and GLEBS motif-containing protein ZNF207b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199665.2 → NP_955959.1  BUB3-interacting and GLEBS motif-containing protein ZNF207b

    See identical proteins and their annotated locations for NP_955959.1

    Status: PROVISIONAL

    Source sequence(s)
    BC049335
    UniProtKB/TrEMBL
    Q7ZUB9
    Related
    ENSDARP00000133984.1, ENSDART00000161562.2
    Conserved Domains (2) summary
    PHA03247
    Location:223 → 431
    PHA03247; large tegument protein UL36; Provisional
    sd00017
    Location:13 → 32
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    18605644..18618106 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009302342.4 → XP_009300617.1  BUB3-interacting and GLEBS motif-containing protein ZNF207b isoform X1

    UniProtKB/TrEMBL
    A0A8M3B3D8
    Conserved Domains (2) summary
    sd00017
    Location:13 → 32
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl26464
    Location:226 → 465
    Atrophin-1; Atrophin-1 family

RNA

  1. XR_661889.4 RNA Sequence

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394637.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    136049..150032 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395252.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    345474..357954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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