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si:ch211-102c2.8 si:ch211-102c2.8 [ Danio rerio (zebrafish) ]

Gene ID: 100002014, updated on 12-Sep-2024

Summary

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Official Symbol
si:ch211-102c2.8provided by ZNC
Official Full Name
si:ch211-102c2.8provided by ZNC
Primary source
ZFIN:ZDB-GENE-081104-98
See related
AllianceGenome:ZFIN:ZDB-GENE-081104-98
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:ch211-102c2.8 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (26765211..26784384)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (26165059..26184133)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 150Aa Neighboring gene ring finger protein 181 Neighboring gene coiled-coil domain containing 117 Neighboring gene transcobalamin II

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
golgin subfamily A member 6-like protein 22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    26765211..26784384
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001341862.9 → XP_001341898.4  golgin subfamily A member 6-like protein 22 isoform X3

    UniProtKB/TrEMBL
    A0A8M1PV15
    Conserved Domains (2) summary
    cd16269
    Location:704 → 713
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:615 → 733
    GBP_C; Guanylate-binding protein, C-terminal domain

  2. XM_009301564.4 → XP_009299839.1  golgin subfamily A member 6-like protein 22 isoform X1

    UniProtKB/TrEMBL
    A0A8M3AZQ6
    Conserved Domains (2) summary
    cd16269
    Location:725 → 734
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:636 → 754
    GBP_C; Guanylate-binding protein, C-terminal domain

  3. XM_021476476.2 → XP_021332151.1  golgin subfamily A member 6-like protein 22 isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q9D3
    Conserved Domains (1) summary
    cl25732
    Location:355 → 731
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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