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carm1l coactivator-associated arginine methyltransferase 1, like [ Danio rerio (zebrafish) ]

Gene ID: 100003090, updated on 4-Jan-2025

Summary

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Official Symbol
carm1lprovided by ZNC
Official Full Name
coactivator-associated arginine methyltransferase 1, likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090312-219
See related
Ensembl:ENSDARG00000091531 AllianceGenome:ZFIN:ZDB-GENE-090312-219
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable protein-arginine omega-N asymmetric methyltransferase activity. Predicted to act upstream of or within peptidyl-arginine methylation. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See carm1l in Genome Data Viewer
Location:
chromosome: 10
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (5060212..5090834)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (5059887..5090291)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene enolase-phosphatase 1 Neighboring gene transmembrane protein 150C Neighboring gene SEC31 homolog A, COPII coat complex component Neighboring gene zgc:113274

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein-arginine N-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein-arginine omega-N asymmetric methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within methylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within peptidyl-arginine methylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
histone-arginine methyltransferase CARM1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    5060212..5090834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479237.2 → XP_021334912.1  histone-arginine methyltransferase CARM1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PTS5
    Conserved Domains (2) summary
    pfam05185
    Location:101 → 409
    PRMT5; PRMT5 arginine-N-methyltransferase
    cl17171
    Location:32 → 119
    PH-like; Pleckstrin homology-like domain

  2. XM_021479236.2 → XP_021334911.1  histone-arginine methyltransferase CARM1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QGR6
    Conserved Domains (2) summary
    pfam05185
    Location:101 → 410
    PRMT5; PRMT5 arginine-N-methyltransferase
    cl17171
    Location:32 → 119
    PH-like; Pleckstrin homology-like domain

  3. XM_021479238.2 → XP_021334913.1  histone-arginine methyltransferase CARM1 isoform X3

    UniProtKB/TrEMBL
    A0A8M9Q698
    Related
    ENSDARP00000118811.1, ENSDART00000145908.3
    Conserved Domains (2) summary
    pfam05185
    Location:101 → 410
    PRMT5; PRMT5 arginine-N-methyltransferase
    cl17171
    Location:32 → 119
    PH-like; Pleckstrin homology-like domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394763.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    117653..148226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009305104.4 → XP_009303379.2  histone-arginine methyltransferase CARM1 isoform X1

    UniProtKB/TrEMBL
    A0A8M3BCT6
    Conserved Domains (2) summary
    pfam05185
    Location:101 → 410
    PRMT5; PRMT5 arginine-N-methyltransferase
    cl17171
    Location:32 → 119
    PH-like; Pleckstrin homology-like domain

  2. XM_068218562.1 → XP_068074663.1  histone-arginine methyltransferase CARM1 isoform X4

  3. XM_009305105.4 → XP_009303380.2  histone-arginine methyltransferase CARM1 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AWH1
    Conserved Domains (2) summary
    pfam05185
    Location:101 → 409
    PRMT5; PRMT5 arginine-N-methyltransferase
    cl17171
    Location:32 → 119
    PH-like; Pleckstrin homology-like domain

  4. XM_017357998.3 → XP_017213487.2  histone-arginine methyltransferase CARM1 isoform X3

    UniProtKB/TrEMBL
    A0A8M6Z2Z2
    Conserved Domains (2) summary
    pfam05185
    Location:101 → 410
    PRMT5; PRMT5 arginine-N-methyltransferase
    cl17171
    Location:32 → 119
    PH-like; Pleckstrin homology-like domain

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395286.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    109885..141347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068219281.1 → XP_068075382.1  histone-arginine methyltransferase CARM1 isoform X1

    UniProtKB/TrEMBL
    A0A8M3BCT6

  2. XM_068219279.1 → XP_068075380.1  histone-arginine methyltransferase CARM1 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AWH1

  3. XM_068219280.1 → XP_068075381.1  histone-arginine methyltransferase CARM1 isoform X5

  4. XM_021474200.2 → XP_021329875.1  histone-arginine methyltransferase CARM1 isoform X3

    UniProtKB/TrEMBL
    A0A8M6Z2Z2
    Conserved Domains (2) summary
    pfam05185
    Location:101 → 410
    PRMT5; PRMT5 arginine-N-methyltransferase
    cl17171
    Location:32 → 119
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
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