U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

si:zfos-905g2.1 si:zfos-905g2.1 [ Danio rerio (zebrafish) ]

Gene ID: 100003955, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
si:zfos-905g2.1provided by ZNC
Official Full Name
si:zfos-905g2.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9565
See related
Ensembl:ENSDARG00000093496 AllianceGenome:ZFIN:ZDB-GENE-030131-9565
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj87c06; wu:fj87c06
Summary
Predicted to enable DNA binding activity. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See si:zfos-905g2.1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (1033669..1042818)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (1024508..1033698)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene cadherin 26, tandem duplicate 2 Neighboring gene cadherin 26, tandem duplicate 1 Neighboring gene zgc:113423 Neighboring gene protein FAM13A-like Neighboring gene solute carrier family 34 member 2b Neighboring gene uncharacterized LOC137489066

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Regulation of cytochrome P450 expression in a novel liver cell line from zebrafish (Brachydanio rerio). Miranda CL, et al. Arch Biochem Biophys, 1993 Sep. PMID 8373170
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein si:zfos-905g2.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    1033669..1042818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001338211.9 → XP_001338247.4  uncharacterized protein si:zfos-905g2.1

    UniProtKB/TrEMBL
    A0A8M1Q7C1, E9QHL3
    Related
    ENSDARP00000115078.1, ENSDART00000143391.3
    Conserved Domains (1) summary
    smart01025
    Location:409 → 475
    BEN; The BEN domain is found in diverse animal proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools