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si:dkeyp-121d4.3 si:dkeyp-121d4.3 [ Danio rerio (zebrafish) ]

Gene ID: 100004621, updated on 28-Oct-2024

Summary

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Official Symbol
si:dkeyp-121d4.3provided by ZNC
Official Full Name
si:dkeyp-121d4.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-962
See related
Ensembl:ENSDARG00000089355 AllianceGenome:ZFIN:ZDB-GENE-130530-962
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:dkeyp-121d4.3 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (4338882..4366964, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (4210290..4238588, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene male-enhanced antigen 1 Neighboring gene protein phosphatase 2, regulatory subunit B', delta Neighboring gene zinc finger protein 318 Neighboring gene SFT2 domain containing 1 Neighboring gene proline rich 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Regulation of cytochrome P450 expression in a novel liver cell line from zebrafish (Brachydanio rerio). Miranda CL, et al. Arch Biochem Biophys, 1993 Sep. PMID 8373170
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein si:dkeyp-121d4.3
Names
zmp:0000000959

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    4338882..4366964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005156511.5 → XP_005156568.1  uncharacterized protein si:dkeyp-121d4.3 isoform X2

    UniProtKB/TrEMBL
    A0A8M2B3E7
    Conserved Domains (3) summary
    cd00229
    Location:1829 → 2002
    SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...
    pfam07271
    Location:81 → 225
    Cytadhesin_P30; Cytadhesin P30/P32
    cl00125
    Location:154 → 193
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...

  2. XM_009307078.4 → XP_009305353.1  uncharacterized protein si:dkeyp-121d4.3 isoform X1

    UniProtKB/TrEMBL
    A0A8M3AYU5, E7F429
    Related
    ENSDARP00000105767.1, ENSDART00000124716.3
    Conserved Domains (3) summary
    cd00229
    Location:1830 → 2003
    SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...
    pfam07271
    Location:81 → 225
    Cytadhesin_P30; Cytadhesin P30/P32
    cl00125
    Location:154 → 193
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
Nucleotide Protein Strain
Heading Accession and Version

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