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rps19bp1 ribosomal protein S19 binding protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 100005069, updated on 2-Nov-2024

Summary

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Official Symbol
rps19bp1provided by ZNC
Official Full Name
ribosomal protein S19 binding protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-110316-2
See related
Ensembl:ENSDARG00000091124 AllianceGenome:ZFIN:ZDB-GENE-110316-2
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable enzyme binding activity. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human RPS19BP1 (ribosomal protein S19 binding protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See rps19bp1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (265077..268040)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (247030..249989)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene transmembrane serine protease 6 Neighboring gene uncharacterized LOC108190354 Neighboring gene interleukin-2 receptor subunit beta Neighboring gene activating transcription factor 4a Neighboring gene uncharacterized LOC557729

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables enzyme binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
active regulator of SIRT1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386402.1 → NP_001373331.1  active regulator of SIRT1

    Status: VALIDATED

    Source sequence(s)
    CABZ01084579
    UniProtKB/TrEMBL
    A0A8M2BJX0, E7F0U9
    Related
    ENSDARP00000111428.1, ENSDART00000123769.3
    Conserved Domains (1) summary
    pfam15684
    Location:30 → 131
    AROS; Active regulator of SIRT1, or 40S ribosomal protein S19-binding 1

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    265077..268040
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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