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si:dkey-51a16.9 si:dkey-51a16.9 [ Danio rerio (zebrafish) ]

Gene ID: 100005267, updated on 2-Nov-2024

Summary

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Official Symbol
si:dkey-51a16.9provided by ZNC
Official Full Name
si:dkey-51a16.9provided by ZNC
Primary source
ZFIN:ZDB-GENE-030616-560
See related
Ensembl:ENSDARG00000039483 AllianceGenome:ZFIN:ZDB-GENE-030616-560
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc50b04; wu:fc50b04; si:packtrz.4; si:xx-packtrz.4
Summary
Predicted to enable zinc ion binding activity. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:dkey-51a16.9 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (25429603..25436714)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (25298362..25306264)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene calcium homeostasis modulator family member 2, tandem duplicate 2 Neighboring gene calcium homeostasis modulator family member 2, tandem duplicate 1 Neighboring gene atonal bHLH transcription factor 7 Neighboring gene polycystic kidney disease 2-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RING finger protein 122

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    25429603..25436714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001344334.8 → XP_001344370.3  RING finger protein 122

    UniProtKB/TrEMBL
    A0A2R8RJC6, A0A8M1PSU9
    Related
    ENSDARP00000113081.1, ENSDART00000141255.3
    Conserved Domains (1) summary
    pfam13639
    Location:67 → 108
    zf-RING_2; Ring finger domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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