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ftr57 finTRIM family, member 57 [ Danio rerio (zebrafish) ]

Gene ID: 100005871, updated on 2-Nov-2024

Summary

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Official Symbol
ftr57provided by ZNC
Official Full Name
finTRIM family, member 57provided by ZNC
Primary source
ZFIN:ZDB-GENE-090312-35
See related
Ensembl:ENSDARG00000074360 AllianceGenome:ZFIN:ZDB-GENE-090312-35
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-252p8.3
Summary
Predicted to enable ligase activity and zinc ion binding activity. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See ftr57 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (5736106..5743408)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (5802259..5809358)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene ladinin Neighboring gene troponin I type 1a (skeletal, slow) Neighboring gene pleckstrin homology-like domain, family A, member 3 Neighboring gene cysteine and glycine-rich protein 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Molecular Characterization and Expression Analysis of ftr01, ftr42, and ftr58 in Zebrafish (Danio rerio). Liu W, et al. Virol Sin, 2019 Aug. PMID 30989427, Free PMC Article
  2. A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish. van der Aa LM, et al. BMC Biol, 2009 Feb 5. PMID 19196451, Free PMC Article
  3. Origin and evolution of TRIM proteins: new insights from the complete TRIM repertoire of zebrafish and pufferfish. Boudinot P, et al. PLoS One, 2011. PMID 21789205, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
E3 ubiquitin/ISG15 ligase TRIM25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    5736106..5743408
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005161933.5 → XP_005161990.1  E3 ubiquitin/ISG15 ligase TRIM25

    UniProtKB/TrEMBL
    A0A8M2B8U3
    Related
    ENSDARP00000113052.1, ENSDART00000134527.2
    Conserved Domains (4) summary
    smart00336
    Location:147 → 179
    BBOX; B-Box-type zinc finger
    pfam15227
    Location:13 → 55
    zf-C3HC4_4; zinc finger of C3HC4-type, RING
    cd16040
    Location:373 → 548
    SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha
    cl09111
    Location:187 → 288
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
Nucleotide Protein Strain
Heading Accession and Version

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