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ap1g2 adaptor related protein complex 1 subunit gamma 2 [ Danio rerio (zebrafish) ]

Gene ID: 100007877, updated on 4-Jan-2025

Summary

Official Symbol
ap1g2provided by ZNC
Official Full Name
adaptor related protein complex 1 subunit gamma 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030616-587
See related
Ensembl:ENSDARG00000054337 AllianceGenome:ZFIN:ZDB-GENE-030616-587
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc07e03; wu:fc07e03; zgc:153847; si:zc14a17.4
Summary
Predicted to enable clathrin adaptor activity. Acts upstream of or within axis elongation; central nervous system development; and vasculature development. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and membrane. Predicted to be part of AP-1 adaptor complex. Is expressed in central nervous system and head. Orthologous to human AP1G2 (adaptor related protein complex 1 subunit gamma 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See ap1g2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (38289579..38312502, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (38307251..38330174, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene zona pellucida glycoprotein 3f, tandem duplicate 1 Neighboring gene zona pellucida glycoprotein 3f, tandem duplicate 2 Neighboring gene NEDD8 ubiquitin like modifier, like Neighboring gene solute carrier family 7 member 8b Neighboring gene protein arginine methyltransferase 5

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC153847

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables clathrin adaptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of AP-1 adaptor complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of AP-1 adaptor complex IEA
Inferred from Electronic Annotation
more info
 
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
AP-1 complex subunit gamma-like 2
Names
adaptor-related protein complex 1, gamma 2 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289858.1NP_001276787.1  AP-1 complex subunit gamma-like 2

    See identical proteins and their annotated locations for NP_001276787.1

    Status: VALIDATED

    Source sequence(s)
    FP017218
    UniProtKB/TrEMBL
    A0A8M1P5S6, B0R024, F1QYF4
    Related
    ENSDARP00000134266.1, ENSDART00000167274.2
    Conserved Domains (2) summary
    smart00809
    Location:675781
    Alpha_adaptinC2; Adaptin C-terminal domain
    pfam01602
    Location:23574
    Adaptin_N; Adaptin N terminal region

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    38289579..38312502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394506.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    333253..356458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001007106.1: Suppressed sequence

    Description
    NM_001007106.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.