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pcp4l1 Purkinje cell protein 4 like 1 [ Danio rerio (zebrafish) ]

Gene ID: 100008021, updated on 4-Jan-2025

Summary

Official Symbol
pcp4l1provided by ZNC
Official Full Name
Purkinje cell protein 4 like 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040724-35
See related
Ensembl:ENSDARG00000023181 AllianceGenome:ZFIN:ZDB-GENE-040724-35
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
bZ1G18.14; si:rp71-1g18.14
Summary
Predicted to be part of ribonucleoprotein complex. Orthologous to human PCP4L1 (Purkinje cell protein 4 like 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See pcp4l1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (37995176..38000276, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (38012848..38017948, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene apolipoprotein L, 1 Neighboring gene apolipoprotein L domain containing 1a Neighboring gene DDB1 and CUL4 associated factor 8 Neighboring gene heterogeneous nuclear ribonucleoprotein C Neighboring gene complement component 1, q subcomponent-like 4 like

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
Purkinje cell protein 4-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001161488.2NP_001154960.1  Purkinje cell protein 4-like protein 1

    See identical proteins and their annotated locations for NP_001154960.1

    Status: VALIDATED

    Source sequence(s)
    BC162193, CR376839
    UniProtKB/TrEMBL
    B3DFX0, F6NKT0, Q7T133
    Related
    ENSDARP00000033497.6, ENSDART00000034790.7

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    37995176..38000276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394506.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    38042..43142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)