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rnf26.L ring finger protein 26 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100037018, updated on 4-Nov-2024

Summary

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Official Symbol
rnf26.L
Official Full Name
ring finger protein 26 L homeolog
Primary source
Xenbase:XB-GENE-966276
Locus tag
XELAEV_18035390mg
See related
EnsemblRapid:ENSXLAG00005012445 AllianceGenome:Xenbase:XB-GENE-966276
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rnf26
Summary
Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Predicted to act upstream of or within protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Orthologous to human RNF26 (ring finger protein 26). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rnf26.L in Genome Data Viewer
Location:
chromosome: 7L
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (81839182..81843074, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (73259781..73265140, complement)

Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene membrane frizzled-related protein L homeolog Neighboring gene complement C1q tumor necrosis factor-related protein 5 Neighboring gene melanoma cell adhesion molecule L homeolog Neighboring gene Cbl proto-oncogene, E3 ubiquitin protein ligase L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ring finger protein 26 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097760.1 → NP_001091229.1  ring finger protein 26 L homeolog

    See identical proteins and their annotated locations for NP_001091229.1

    Status: PROVISIONAL

    Source sequence(s)
    BC130123
    UniProtKB/TrEMBL
    A0A974HC23, A1L3I8
    Related
    ENSXLAP00005036513.1, ENSXLAT00005037422.1
    Conserved Domains (2) summary
    COG5236
    Location:331 → 429
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    cd16788
    Location:385 → 432
    mRING-HC-C3HC5_RNF26; Modified RING finger, HC subclass (C3HC5-type), found in RING finger protein 26 (RNF26) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    81839182..81843074 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018224207.2 → XP_018079696.1  ring finger protein 26 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HC23, A1L3I8
    Related
    ENSXLAP00005036527.1, ENSXLAT00005037436.1
    Conserved Domains (2) summary
    COG5236
    Location:331 → 429
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    cd16788
    Location:385 → 432
    mRING-HC-C3HC5_RNF26; Modified RING finger, HC subclass (C3HC5-type), found in RING finger protein 26 (RNF26) and similar proteins

  2. XM_041568313.1 → XP_041424247.1  ring finger protein 26 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HC23, A1L3I8
    Related
    ENSXLAP00005036542.1, ENSXLAT00005037451.1
    Conserved Domains (2) summary
    COG5236
    Location:331 → 429
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    cd16788
    Location:385 → 432
    mRING-HC-C3HC5_RNF26; Modified RING finger, HC subclass (C3HC5-type), found in RING finger protein 26 (RNF26) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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