gtf3ab general transcription factor IIIA, b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: gtf3abprovided by ZNC
Official Full Name: general transcription factor IIIA, bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-7698
See related: Ensembl:ENSDARG00000071583 AllianceGenome:ZFIN:ZDB-GENE-030131-7698
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ns:zf-a141; zgc:162349
Summary: Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Is expressed in ovary and testis. Orthologous to human GTF3A (general transcription factor IIIA). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 24

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	24	NC_007135.7 (21640635..21642858)
105	previous assembly	GRCz10 (GCF_000002035.5)	24	NC_007135.6 (21495461..21497684)

Chromosome 24 - NC_007135.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: general transcription factor IIIA, b

Names: gtf3a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001089544.2 → NP_001083013.2 general transcription factor IIIA, b

Status: VALIDATED

Source sequence(s)

BX571696, EH521201, EH546778

UniProtKB/TrEMBL

A0A8M1NEE9, F1R8L4

Related

ENSDARP00000096703.4, ENSDART00000105925.5

Conserved Domains (2) summary

COG5048
Location:40 → 180

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:18 → 36

ZF_C2H2; C2H2 Zn finger [structural motif]