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Gm15501 predicted pseudogene 15501 [ Mus musculus (house mouse) ]

Gene ID: 100040298, updated on 9-Aug-2024

Summary

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Official Symbol
Gm15501provided by MGI
Official Full Name
predicted pseudogene 15501provided by MGI
Primary source
MGI:MGI:3704296
See related
Ensembl:ENSMUSG00000087412 Ensembl:ENSMUSG00000121797 AllianceGenome:MGI:3704296
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EyeLinc5
Summary
Orthologous to human RPS8 (ribosomal protein S8). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See Gm15501 in Genome Data Viewer
Location:
7 E1; 7 51.66 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (92828169..92833383, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (93178962..93184176, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_19534 Neighboring gene family with sequence similarity 181, member B Neighboring gene STARR-seq mESC enhancer starr_19535 Neighboring gene STARR-seq mESC enhancer starr_19536 Neighboring gene predicted gene, 53383 Neighboring gene predicted gene, 25860 Neighboring gene STARR-seq mESC enhancer starr_19537 Neighboring gene STARR-seq mESC enhancer starr_19538 Neighboring gene STARR-seq mESC enhancer starr_19539 Neighboring gene STARR-seq mESC enhancer starr_19540 Neighboring gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 pseudogene Neighboring gene brain cytoplasmic RNA 1, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionarily conserved long intergenic non-coding RNAs in the eye. Mustafi D, et al. Hum Mol Genet, 2013 Aug 1. PMID 23562822, Free PMC Article
  2. Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo. Evsikov AV, et al. Genes Dev, 2006 Oct 1. PMID 17015433, Free PMC Article
  3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  4. The transcriptional landscape of the mammalian genome. Carninci P, et al. Science, 2005 Sep 2. PMID 16141072

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ribosomal protein S8-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358087.2 → NP_001345016.1  ribosomal protein S8-like

    Status: VALIDATED

    Source sequence(s)
    AC102906
    UniProtKB/Swiss-Prot
    P62242, Q8C2G6
    UniProtKB/TrEMBL
    Q497E9, Q5M9L9
    Related
    ENSMUST00000133910.3
    Conserved Domains (1) summary
    PTZ00148
    Location:1 → 206
    PTZ00148; 40S ribosomal protein S8; Provisional

  2. NM_001377041.1 → NP_001363970.1  ribosomal protein S8-like

    Status: VALIDATED

    Source sequence(s)
    AC102906
    UniProtKB/Swiss-Prot
    P62242, Q8C2G6
    UniProtKB/TrEMBL
    Q497E9, Q5M9L9
    Related
    ENSMUST00000140687.2
    Conserved Domains (1) summary
    PTZ00148
    Location:1 → 206
    PTZ00148; 40S ribosomal protein S8; Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    92828169..92833383 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_033167.1: Suppressed sequence

    Description
    NG_033167.1: This RefSeq was removed because it is now thought that this locus is transcribed.
Nucleotide Protein Strain
Heading Accession and Version

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