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Gm3636 predicted gene 3636 [ Mus musculus (house mouse) ]

Gene ID: 100041151, updated on 17-Aug-2024

Summary

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Official Symbol
Gm3636provided by MGI
Official Full Name
predicted gene 3636provided by MGI
Primary source
MGI:MGI:3781812
See related
Ensembl:ENSMUSG00000091754 AllianceGenome:MGI:3781812
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
100042043
Expression
Biased expression in CNS E18 (RPKM 5.7), CNS E14 (RPKM 3.4) and 10 other tissues See more
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Genomic context

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See Gm3636 in Genome Data Viewer
Location:
14 A2; 14 4.02 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (15712153..15734090)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (6735683..6757601, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31035 Neighboring gene predicted gene 3667 Neighboring gene predicted gene, 26680 Neighboring gene predicted gene 3642 Neighboring gene predicted gene 8050 Neighboring gene ubiquitin specific peptidase 7 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article
  2. Transcriptome analysis of mouse stem cells and early embryos. Sharov AA, et al. PLoS Biol, 2003 Dec. PMID 14691545, Free PMC Article
  3. Isolation of novel tissue-specific genes from cDNA libraries representing the individual tissue constituents of the gastrulating mouse embryo. Harrison SM, et al. Development, 1995 Aug. PMID 7671812
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

General gene information

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Markers

General protein information

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Preferred Names
uncharacterized protein LOC100041151
Names
alpha33-takusan
alpha37-takusan

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001309401.1 → NP_001296330.1  uncharacterized protein LOC100041151

    See identical proteins and their annotated locations for NP_001296330.1

    Status: VALIDATED

    Source sequence(s)
    AC161818, CD776167, CN668200, EF651834
    Consensus CDS
    CCDS84086.1
    UniProtKB/TrEMBL
    A6NAS3, A6NAV4, E9Q3J6
    Related
    ENSMUST00000163850.9
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 70
    Takusan; Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    15712153..15734090
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017315721.3 → XP_017171210.1  uncharacterized protein LOC100041151 isoform X2

  2. XM_017315722.3 → XP_017171211.1  uncharacterized protein LOC100041151 isoform X3

  3. XM_006518136.4 → XP_006518199.1  uncharacterized protein LOC100041151 isoform X1

  4. XM_017315723.3 → XP_017171212.1  uncharacterized protein LOC100041151 isoform X4

  5. XM_036158305.1 → XP_036014198.1  uncharacterized protein LOC100041151 isoform X5

  6. XM_036158306.1 → XP_036014199.1  uncharacterized protein LOC100041151 isoform X6

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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