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Gm3667 predicted gene 3667 [ Mus musculus (house mouse) ]

Gene ID: 100042100, updated on 3-Apr-2024

Summary

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Official Symbol
Gm3667provided by MGI
Official Full Name
predicted gene 3667provided by MGI
Primary source
MGI:MGI:3781843
See related
Ensembl:ENSMUSG00000090691 AllianceGenome:MGI:3781843
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in CNS E18 (RPKM 1.3), CNS E14 (RPKM 0.7) and 16 other tissues See more
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Genomic context

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See Gm3667 in Genome Data Viewer
Location:
14 A2; 14 4.09 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (15579183..15601273)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (6868500..6890560, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31035 Neighboring gene predicted gene 10406 Neighboring gene STARR-seq mESC enhancer starr_35828 Neighboring gene predicted gene, 53833 Neighboring gene predicted gene, 26680 Neighboring gene predicted gene 3642 Neighboring gene predicted gene 3636

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
uncharacterized protein LOC100042100
Names
alpha16-takusan

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374143.1 → NP_001361072.1  uncharacterized protein LOC100042100 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1-4 all encode the same isoform (a).
    Source sequence(s)
    AC130825
    Consensus CDS
    CCDS88558.1
    UniProtKB/TrEMBL
    A6NAS5, K7N757, Q7TMK7
    Conserved Domains (1) summary
    pfam04822
    Location:48 → 128
    Takusan

  2. NM_001374144.1 → NP_001361073.1  uncharacterized protein LOC100042100 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2), as well as variants 1, 3, and 4, encodes isoform a.
    Source sequence(s)
    AC130825
    UniProtKB/TrEMBL
    A6NAS5, K7N757, Q7TMK7
    Conserved Domains (1) summary
    pfam04822
    Location:48 → 128
    Takusan

  3. NM_001374145.1 → NP_001361074.1  uncharacterized protein LOC100042100 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3), as well as variants 1, 2, and 4, encodes isoform a.
    Source sequence(s)
    AC130825
    UniProtKB/TrEMBL
    A6NAS5, K7N757, Q7TMK7
    Conserved Domains (1) summary
    pfam04822
    Location:48 → 128
    Takusan

  4. NM_001374146.1 → NP_001361075.1  uncharacterized protein LOC100042100 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4), as well as variants 1-3, encodes isoform a.
    Source sequence(s)
    AC130825
    UniProtKB/TrEMBL
    A6NAS5, K7N757, Q7TMK7
    Related
    ENSMUSP00000133107.2, ENSMUST00000171906.2
    Conserved Domains (1) summary
    pfam04822
    Location:48 → 128
    Takusan

  5. NM_001374147.1 → NP_001361076.1  uncharacterized protein LOC100042100 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5), as well as variants 6-8, encodes isoform b.
    Source sequence(s)
    AC130825
    UniProtKB/TrEMBL
    A6NAR9, A6NAT3, A6NAV3
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 73
    Takusan

  6. NM_001374148.1 → NP_001361077.1  uncharacterized protein LOC100042100 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6), as well as variants 5, 7, and 8, encodes isoform b.
    Source sequence(s)
    AC130825
    UniProtKB/TrEMBL
    A6NAR9, A6NAT3, A6NAV3
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 73
    Takusan

  7. NM_001374149.1 → NP_001361078.1  uncharacterized protein LOC100042100 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7), as well as variants 5, 6, and 8, encodes isoform b.
    Source sequence(s)
    AC130825
    UniProtKB/TrEMBL
    A6NAR9, A6NAT3, A6NAV3
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 73
    Takusan

  8. NM_001374150.1 → NP_001361079.1  uncharacterized protein LOC100042100 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8), as well as variants 5-7, encodes isoform b.
    Source sequence(s)
    AC130825
    UniProtKB/TrEMBL
    A6NAR9, A6NAT3, A6NAV3
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 73
    Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    15579183..15601273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036158320.1 → XP_036014213.1  uncharacterized protein LOC100042100 isoform X2

    Conserved Domains (1) summary
    pfam04822
    Location:67 → 147
    Takusan

  2. XM_036158319.1 → XP_036014212.1  uncharacterized protein LOC100042100 isoform X1

    UniProtKB/TrEMBL
    A0AA74KSW7
    Conserved Domains (1) summary
    pfam04822
    Location:101 → 181
    Takusan
Nucleotide Protein Strain
Heading Accession and Version

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