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Gm4013 predicted gene 4013 [ Mus musculus (house mouse) ]

Gene ID: 100042757, updated on 17-Aug-2024

Summary

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Official Symbol
Gm4013provided by MGI
Official Full Name
predicted gene 4013provided by MGI
Primary source
MGI:MGI:3782187
See related
Ensembl:ENSMUSG00000117662 AllianceGenome:MGI:3782187
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
8430416G17Rik
Expression
Ubiquitous expression in liver adult (RPKM 2.5), kidney adult (RPKM 2.5) and 28 other tissues See more
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Genomic context

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See Gm4013 in Genome Data Viewer
Location:
18 B3; 18
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (42407445..42408262, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (42274380..42275197, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene high mobility group box 1-like pseudogene Neighboring gene leucyl-tRNA synthetase 1 Neighboring gene STARR-seq mESC enhancer starr_44434 Neighboring gene ribosomal protein S19, pseudogene 4 Neighboring gene STARR-positive B cell enhancer ABC_E494 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:42434622-42434731 Neighboring gene STARR-positive B cell enhancer ABC_E495 Neighboring gene RNA binding motif protein 27 Neighboring gene STARR-seq mESC enhancer starr_44436 Neighboring gene STARR-seq mESC enhancer starr_44438 Neighboring gene STARR-seq mESC enhancer starr_44439 Neighboring gene POU domain, class 4, transcription factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mutagenesis of diploid mammalian genes by gene entrapment. Lin Q, et al. Nucleic Acids Res, 2006. PMID 17062627, Free PMC Article
  2. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  3. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033452.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125110
    Related
    ENSMUST00000236263.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    42407445..42408262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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