U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Gm10046 predicted gene 10046 [ Mus musculus (house mouse) ]

Gene ID: 100043229, updated on 8-Feb-2024

Summary

Go to the top of the page Help
Official Symbol
Gm10046provided by MGI
Official Full Name
predicted gene 10046provided by MGI
Primary source
MGI:MGI:3797981
See related
Ensembl:ENSMUSG00000121480 AllianceGenome:MGI:3797981
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 5.2), CNS E18 (RPKM 1.3) and 12 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Gm10046 in Genome Data Viewer
Location:
7 A3; 7 15.97 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (27465098..27470397)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (27765673..27770972)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene PHD finger protein 5B, pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E10431 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28516760-28516943 Neighboring gene zinc finger protein 60 Neighboring gene STARR-seq mESC enhancer starr_18388 Neighboring gene STARR-seq mESC enhancer starr_18389 Neighboring gene predicted gene, 29810 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28589770-28589879 Neighboring gene zinc finger protein 626

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033484.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC164532, AI390201
    Related
    ENSMUST00000208208.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    27465098..27470397
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.