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Spata31f1d spermatogenesis associated 31 subfamily F member 1D [ Mus musculus (house mouse) ]

Gene ID: 100043920, updated on 9-Aug-2024

Summary

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Official Symbol
Spata31f1dprovided by MGI
Official Full Name
spermatogenesis associated 31 subfamily F member 1Dprovided by MGI
Primary source
MGI:MGI:5434294
See related
Ensembl:ENSMUSG00000078746 AllianceGenome:MGI:5434294
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam205a; Gm20938; Fam205a4; Spata31f1-4
Expression
Biased expression in testis adult (RPKM 14.2), cortex adult (RPKM 3.3) and 6 other tissues See more
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Genomic context

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See Spata31f1d in Genome Data Viewer
Location:
4 A5; 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (41774311..41971858)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (41942295..41971858)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10231 Neighboring gene STARR-positive B cell enhancer ABC_E10232 Neighboring gene predicted gene, 42274 Neighboring gene STARR-positive B cell enhancer ABC_E1641 Neighboring gene interleukin 11 receptor subunit alpha 1 Neighboring gene galactose-1-phosphate uridyl transferase Neighboring gene C-C motif chemokine ligand 27A Neighboring gene C-C motif chemokine ligand 19, pseudogene 5 Neighboring gene ethanol induced 1 pseudogene Neighboring gene Fam205 pseudogene Neighboring gene predicted gene, 30036 Neighboring gene predicted gene, 54216 Neighboring gene predicted gene, 29801 Neighboring gene predicted gene, 29804 Neighboring gene transmembrane protein C9orf144B homolog Neighboring gene C-C motif chemokine ligand 21D Neighboring gene C-C motif chemokine ligand 19, pseudogene 1 Neighboring gene uncharacterized LOC118568647 Neighboring gene predicted gene, 20878 Neighboring gene RIKEN cDNA 4933409K07 gene Neighboring gene predicted gene, 21093

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Lineage-specific biology revealed by a finished genome assembly of the mouse. Church DM, et al. PLoS Biol, 2009 May 5. PMID 19468303, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
spermatogenesis-associated protein 31F1D; protein SPATA31F1-4
Names
family with sequence similarity 205, member A4
protein FAM205A
protein FAM205A-4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357590.1 → NP_001344519.1  spermatogenesis-associated protein 31F1D

    Status: VALIDATED

    Source sequence(s)
    CT868690
    Conserved Domains (2) summary
    pfam14650
    Location:335 → 520
    FAM75; FAM75 family
    pfam15371
    Location:3 → 57
    DUF4599; Domain of unknown function (DUF4599)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    41774311..41971858
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036163531.1 → XP_036019424.1  protein SPATA31F1-4 isoform X2

    Conserved Domains (2) summary
    pfam14650
    Location:335 → 520
    FAM75; FAM75 family
    pfam15371
    Location:3 → 57
    DUF4599; Domain of unknown function (DUF4599)

  2. XM_036163532.1 → XP_036019425.1  protein SPATA31F1-4 isoform X2

    Conserved Domains (2) summary
    pfam14650
    Location:335 → 520
    FAM75; FAM75 family
    pfam15371
    Location:3 → 57
    DUF4599; Domain of unknown function (DUF4599)

  3. XM_001481239.6 → XP_001481289.2  protein SPATA31F1-4 isoform X1

    See identical proteins and their annotated locations for XP_001481289.2

    UniProtKB/Swiss-Prot
    A2APU8, C0HKD1, C0HKD2, C0HKD3
    Related
    ENSMUSP00000103661.3, ENSMUST00000108026.3
    Conserved Domains (3) summary
    pfam14650
    Location:416 → 601
    FAM75; FAM75 family
    pfam15371
    Location:52 → 138
    DUF4599; Domain of unknown function (DUF4599)
    pfam15402
    Location:1093 → 1246
    Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C0HKD3.1 GenPept UniProtKB/Swiss-Prot:C0HKD3

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