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si:ch73-6k14.2 si:ch73-6k14.2 [ Danio rerio (zebrafish) ]

Gene ID: 100150046, updated on 2-Nov-2024

Summary

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Official Symbol
si:ch73-6k14.2provided by ZNC
Official Full Name
si:ch73-6k14.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-110914-243
See related
AllianceGenome:ZFIN:ZDB-GENE-110914-243
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human DEPP1 (DEPP autophagy regulator 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:ch73-6k14.2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (49245794..49250539, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (48599898..48606100, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137495819 Neighboring gene chemokine (C-X-C motif) ligand 18b Neighboring gene calcyon neuron-specific vesicular protein Neighboring gene muscle segment homeobox 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Names
si:ch73-6k14.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    49245794..49250539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_011015812.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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