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si:ch211-117c9.5 si:ch211-117c9.5 [ Danio rerio (zebrafish) ]

Gene ID: 100150452, updated on 27-Mar-2024

Summary

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Official Symbol
si:ch211-117c9.5provided by ZNC
Official Full Name
si:ch211-117c9.5provided by ZNC
Primary source
ZFIN:ZDB-GENE-110408-2
See related
Ensembl:ENSDARG00000071235 AllianceGenome:ZFIN:ZDB-GENE-110408-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:ch211-117c9.5 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (6795463..6841245)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (6861503..6907273)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene prostaglandin E synthase 3b (cytosolic) Neighboring gene secreted frizzled-related protein 5-like Neighboring gene prolyl 4-hydroxylase, transmembrane a Neighboring gene finTRIM family, member 59 Neighboring gene finTRIM family, member 58

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Distinct myocardial lineages break atrial symmetry during cardiogenesis in zebrafish. Guerra A, et al. Elife, 2018 May 15. PMID 29762122, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables gamma-aminobutyric acid:sodium:chloride symporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables symporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in amino acid transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in sodium ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
sodium- and chloride-dependent creatine transporter 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    6795463..6841245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009296645.3 → XP_009294920.1  sodium- and chloride-dependent creatine transporter 1-like isoform X2

    UniProtKB/TrEMBL
    A0A8M3B5X2
    Conserved Domains (1) summary
    cl00456
    Location:63 → 567
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_001922928.7 → XP_001922963.4  sodium- and chloride-dependent creatine transporter 1-like isoform X1

    UniProtKB/TrEMBL
    A0A8M1QR72, E7EXM3
    Related
    ENSDARP00000086564.5, ENSDART00000092131.7
    Conserved Domains (1) summary
    cl00456
    Location:63 → 652
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein
Heading Accession and Version

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