erlin2 ER lipid raft associated 2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: erlin2provided by ZNC
Official Full Name: ER lipid raft associated 2provided by ZNC
Primary source: ZFIN:ZDB-GENE-090505-4
See related: Ensembl:ENSDARG00000086523 AllianceGenome:ZFIN:ZDB-GENE-090505-4
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 18. Orthologous to human ERLIN2 (ER lipid raft associated 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 5

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (35463737..35487953)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (34863584..34887800)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc73a10.x1 (e-PCR)
- UniSTS:194380

fb57b01 (e-PCR)
- UniSTS:187223

General protein information

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Preferred Names: erlin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001128415.1 → NP_001121887.1 erlin-2

See identical proteins and their annotated locations for NP_001121887.1

Status: PROVISIONAL

Source sequence(s)

CR762390

UniProtKB/Swiss-Prot

A3QK16

Related

ENSDARP00000121177.1, ENSDART00000131286.2

Conserved Domains (3) summary

smart00244
Location:20 → 186

PHB; prohibitin homologues

cd03406
Location:19 → 306

SPFH_like_u3; Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

TIGR02794
Location:186 → 274

tolA_full; TolA protein