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Gm3173 predicted gene 3173 [ Mus musculus (house mouse) ]

Gene ID: 100169868, updated on 17-Aug-2024

Summary

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Official Symbol
Gm3173provided by MGI
Official Full Name
predicted gene 3173provided by MGI
Primary source
MGI:MGI:3781352
See related
Ensembl:ENSMUSG00000079386 AllianceGenome:MGI:3781352
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
100041162
Expression
Broad expression in CNS E18 (RPKM 1.4), CNS E14 (RPKM 0.9) and 20 other tissues See more
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Genomic context

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Location:
14 A2; 14 2.45 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (17949264..17971225, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (4498534..4520509)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26655 Neighboring gene ribosomal protein L3 pseudogene Neighboring gene predicted gene 3047 Neighboring gene predicted gene 3030 Neighboring gene predicted gene 3182 Neighboring gene predicted gene 3164

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

General protein information

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Preferred Names
uncharacterized protein LOC100169868
Names
alpha27-takusan
alpha4-takusan

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374156.1 → NP_001361085.1  uncharacterized protein LOC100169868 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1 and 2 both encode the same isoform (a).
    Source sequence(s)
    AC186381, AC196039
    UniProtKB/TrEMBL
    A0AA74KT48

  2. NM_001374157.1 → NP_001361086.1  uncharacterized protein LOC100169868 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2), as well as variant 1, encodes isoform a.
    Source sequence(s)
    AC186381, AC196039
    UniProtKB/TrEMBL
    A0AA74KT48

  3. NM_001374158.1 → NP_001361087.1  uncharacterized protein LOC100169868 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3), as well as variants 4 and 5, encodes isoform b.
    Source sequence(s)
    AC186381, AC196039
    Consensus CDS
    CCDS88545.1
    UniProtKB/TrEMBL
    A6NAS3, E9Q9Z8
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 73
    Takusan

  4. NM_001374159.1 → NP_001361088.1  uncharacterized protein LOC100169868 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4), as well as variants 3 and 5, encodes isoform b.
    Source sequence(s)
    AC186381, AC196039
    UniProtKB/TrEMBL
    A6NAS3, E9Q9Z8
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 73
    Takusan

  5. NM_001374160.1 → NP_001361089.1  uncharacterized protein LOC100169868 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5), as well as variants 3 and 4, encodes isoform b.
    Source sequence(s)
    AC186381, AC196039
    Consensus CDS
    CCDS88545.1
    UniProtKB/TrEMBL
    A6NAS3, E9Q9Z8
    Related
    ENSMUSP00000108396.3, ENSMUST00000112776.4
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 73
    Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    17949264..17971225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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