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smim13 small integral membrane protein 13 [ Danio rerio (zebrafish) ]

Gene ID: 100190889, updated on 12-Sep-2024

Summary

Official Symbol
smim13provided by ZNC
Official Full Name
small integral membrane protein 13provided by ZNC
Primary source
ZFIN:ZDB-GENE-141212-279
See related
Ensembl:ENSDARG00000089204 AllianceGenome:ZFIN:ZDB-GENE-141212-279
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch73-364o13.1
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM13 (small integral membrane protein 13). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See smim13 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (3717982..3726768, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (3777084..3785870, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488460 Neighboring gene neural precursor cell expressed, developmentally down-regulated 9 Neighboring gene bloodthirsty-related gene family, member 22 Neighboring gene E3 ubiquitin-protein ligase TRIM39-like

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
small integral membrane protein 13
Names
UPF0766 protein C6orf228 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135579.2NP_001129051.1  small integral membrane protein 13

    See identical proteins and their annotated locations for NP_001129051.1

    Status: VALIDATED

    Source sequence(s)
    EH456364, EH468096, EH485638, EH586948, EH596736
    UniProtKB/Swiss-Prot
    B8JJV5
    Related
    ENSDARP00000140977.1, ENSDART00000161738.2
    Conserved Domains (1) summary
    pfam15938
    Location:146
    DUF4750; Domain of unknown function (DUF4750)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    3717982..3726768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395050.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    259855..266478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)